Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22430 and BPHYT_RS22435 are separated by 10 nucleotides BPHYT_RS22435 and BPHYT_RS22440 are separated by 123 nucleotides
BPHYT_RS22430: BPHYT_RS22430 - succinate-semialdehyde dehydrogenase, at 586,887 to 588,347
_RS22430
BPHYT_RS22435: BPHYT_RS22435 - 4-aminobutyrate aminotransferase, at 588,358 to 589,641
_RS22435
BPHYT_RS22440: BPHYT_RS22440 - DNA-binding protein, at 589,765 to 591,270
_RS22440
Position (kb) 588
589
590 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 587.452 kb on + strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.879 kb on + strand, within BPHYT_RS22430 at 587.879 kb on + strand, within BPHYT_RS22430 at 587.880 kb on - strand, within BPHYT_RS22430 at 588.007 kb on + strand, within BPHYT_RS22430 at 588.299 kb on - strand at 588.359 kb on + strand at 588.640 kb on + strand, within BPHYT_RS22435 at 588.752 kb on + strand, within BPHYT_RS22435 at 589.111 kb on + strand, within BPHYT_RS22435 at 589.388 kb on + strand, within BPHYT_RS22435 at 589.388 kb on + strand, within BPHYT_RS22435 at 589.389 kb on - strand, within BPHYT_RS22435 at 589.412 kb on + strand, within BPHYT_RS22435 at 589.646 kb on - strand at 589.696 kb on - strand at 589.696 kb on - strand at 589.696 kb on - strand at 589.706 kb on + strand at 589.706 kb on + strand at 589.707 kb on - strand at 589.707 kb on - strand at 589.708 kb on + strand at 589.832 kb on - strand at 589.960 kb on + strand, within BPHYT_RS22440 at 589.961 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 589.985 kb on - strand, within BPHYT_RS22440 at 590.238 kb on + strand, within BPHYT_RS22440 at 590.239 kb on - strand, within BPHYT_RS22440 at 590.275 kb on + strand, within BPHYT_RS22440 at 590.418 kb on - strand, within BPHYT_RS22440
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 587,452 + BPHYT_RS22430 0.39 -0.1 587,453 - BPHYT_RS22430 0.39 -0.2 587,453 - BPHYT_RS22430 0.39 +1.3 587,879 + BPHYT_RS22430 0.68 +0.8 587,879 + BPHYT_RS22430 0.68 -0.3 587,880 - BPHYT_RS22430 0.68 +1.1 588,007 + BPHYT_RS22430 0.77 -1.6 588,299 - +0.3 588,359 + -1.7 588,640 + BPHYT_RS22435 0.22 +0.6 588,752 + BPHYT_RS22435 0.31 -0.6 589,111 + BPHYT_RS22435 0.59 -0.6 589,388 + BPHYT_RS22435 0.80 +0.8 589,388 + BPHYT_RS22435 0.80 -0.8 589,389 - BPHYT_RS22435 0.80 -1.1 589,412 + BPHYT_RS22435 0.82 -1.2 589,646 - -1.4 589,696 - +3.8 589,696 - -1.3 589,696 - +1.2 589,706 + +0.5 589,706 + +0.3 589,707 - +2.0 589,707 - +0.9 589,708 + +0.8 589,832 - +0.6 589,960 + BPHYT_RS22440 0.13 +0.8 589,961 - BPHYT_RS22440 0.13 +2.1 589,985 - BPHYT_RS22440 0.15 -0.8 589,985 - BPHYT_RS22440 0.15 +2.6 589,985 - BPHYT_RS22440 0.15 +1.3 590,238 + BPHYT_RS22440 0.31 +0.6 590,239 - BPHYT_RS22440 0.31 +2.1 590,275 + BPHYT_RS22440 0.34 +1.1 590,418 - BPHYT_RS22440 0.43 +1.4
Or see this region's nucleotide sequence