Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22430

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22425 and BPHYT_RS22430 are separated by 221 nucleotidesBPHYT_RS22430 and BPHYT_RS22435 are separated by 10 nucleotides BPHYT_RS22425: BPHYT_RS22425 - GntR family transcriptional regulator, at 585,250 to 586,665 _RS22425 BPHYT_RS22430: BPHYT_RS22430 - succinate-semialdehyde dehydrogenase, at 586,887 to 588,347 _RS22430 BPHYT_RS22435: BPHYT_RS22435 - 4-aminobutyrate aminotransferase, at 588,358 to 589,641 _RS22435 Position (kb) 586 587 588 589Strain fitness (log2 ratio) -1 0 1at 585.942 kb on + strand, within BPHYT_RS22425at 586.188 kb on - strand, within BPHYT_RS22425at 586.198 kb on + strand, within BPHYT_RS22425at 586.759 kb on - strandat 586.811 kb on + strandat 586.910 kb on - strandat 586.925 kb on - strandat 586.925 kb on - strandat 587.083 kb on + strand, within BPHYT_RS22430at 587.084 kb on - strand, within BPHYT_RS22430at 587.084 kb on - strand, within BPHYT_RS22430at 587.084 kb on - strand, within BPHYT_RS22430at 587.452 kb on + strand, within BPHYT_RS22430at 587.453 kb on - strand, within BPHYT_RS22430at 587.453 kb on - strand, within BPHYT_RS22430at 587.879 kb on + strand, within BPHYT_RS22430at 587.879 kb on + strand, within BPHYT_RS22430at 587.880 kb on - strand, within BPHYT_RS22430at 588.007 kb on + strand, within BPHYT_RS22430at 588.299 kb on - strandat 588.359 kb on + strandat 588.640 kb on + strand, within BPHYT_RS22435at 588.752 kb on + strand, within BPHYT_RS22435at 589.111 kb on + strand, within BPHYT_RS22435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
remove
585,942 + BPHYT_RS22425 0.49 +1.5
586,188 - BPHYT_RS22425 0.66 -1.4
586,198 + BPHYT_RS22425 0.67 +0.4
586,759 - +0.9
586,811 + +0.7
586,910 - +0.1
586,925 - +0.6
586,925 - -0.5
587,083 + BPHYT_RS22430 0.13 +0.0
587,084 - BPHYT_RS22430 0.13 +0.7
587,084 - BPHYT_RS22430 0.13 -0.0
587,084 - BPHYT_RS22430 0.13 -0.0
587,452 + BPHYT_RS22430 0.39 -0.1
587,453 - BPHYT_RS22430 0.39 -0.2
587,453 - BPHYT_RS22430 0.39 +1.3
587,879 + BPHYT_RS22430 0.68 +0.8
587,879 + BPHYT_RS22430 0.68 -0.3
587,880 - BPHYT_RS22430 0.68 +1.1
588,007 + BPHYT_RS22430 0.77 -1.6
588,299 - +0.3
588,359 + -1.7
588,640 + BPHYT_RS22435 0.22 +0.6
588,752 + BPHYT_RS22435 0.31 -0.6
589,111 + BPHYT_RS22435 0.59 -0.6

Or see this region's nucleotide sequence