Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22365

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22360 and BPHYT_RS22365 are separated by 24 nucleotidesBPHYT_RS22365 and BPHYT_RS22370 are separated by 75 nucleotides BPHYT_RS22360: BPHYT_RS22360 - response regulator receiver, at 572,982 to 573,944 _RS22360 BPHYT_RS22365: BPHYT_RS22365 - membrane protein, at 573,969 to 575,411 _RS22365 BPHYT_RS22370: BPHYT_RS22370 - alpha/beta hydrolase, at 575,487 to 576,452 _RS22370 Position (kb) 573 574 575 576Strain fitness (log2 ratio) -2 -1 0 1 2at 572.982 kb on - strandat 573.052 kb on - strandat 573.541 kb on - strand, within BPHYT_RS22360at 573.541 kb on - strand, within BPHYT_RS22360at 573.861 kb on + strandat 573.892 kb on + strandat 573.893 kb on - strandat 573.973 kb on - strandat 573.973 kb on - strandat 574.023 kb on + strandat 574.028 kb on - strandat 574.028 kb on - strandat 574.168 kb on - strand, within BPHYT_RS22365at 574.200 kb on + strand, within BPHYT_RS22365at 574.260 kb on + strand, within BPHYT_RS22365at 574.286 kb on - strand, within BPHYT_RS22365at 574.512 kb on + strand, within BPHYT_RS22365at 574.524 kb on + strand, within BPHYT_RS22365at 574.525 kb on - strand, within BPHYT_RS22365at 574.753 kb on - strand, within BPHYT_RS22365at 575.097 kb on - strand, within BPHYT_RS22365at 575.181 kb on + strand, within BPHYT_RS22365at 575.652 kb on - strand, within BPHYT_RS22370at 575.652 kb on - strand, within BPHYT_RS22370at 575.817 kb on + strand, within BPHYT_RS22370at 575.907 kb on + strand, within BPHYT_RS22370at 575.916 kb on + strand, within BPHYT_RS22370at 575.916 kb on + strand, within BPHYT_RS22370at 576.347 kb on - strand, within BPHYT_RS22370

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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572,982 - +0.0
573,052 - -1.0
573,541 - BPHYT_RS22360 0.58 -2.5
573,541 - BPHYT_RS22360 0.58 -1.0
573,861 + -2.3
573,892 + +0.0
573,893 - -1.5
573,973 - +2.6
573,973 - -0.4
574,023 + +0.4
574,028 - -0.5
574,028 - +0.3
574,168 - BPHYT_RS22365 0.14 -1.0
574,200 + BPHYT_RS22365 0.16 +0.7
574,260 + BPHYT_RS22365 0.20 +2.1
574,286 - BPHYT_RS22365 0.22 -0.1
574,512 + BPHYT_RS22365 0.38 -1.5
574,524 + BPHYT_RS22365 0.38 +0.3
574,525 - BPHYT_RS22365 0.39 +1.3
574,753 - BPHYT_RS22365 0.54 -0.7
575,097 - BPHYT_RS22365 0.78 +1.0
575,181 + BPHYT_RS22365 0.84 +0.3
575,652 - BPHYT_RS22370 0.17 +1.1
575,652 - BPHYT_RS22370 0.17 +1.2
575,817 + BPHYT_RS22370 0.34 +2.0
575,907 + BPHYT_RS22370 0.43 -0.3
575,916 + BPHYT_RS22370 0.44 -0.4
575,916 + BPHYT_RS22370 0.44 +0.9
576,347 - BPHYT_RS22370 0.89 +0.2

Or see this region's nucleotide sequence