Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22335

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22330 and BPHYT_RS22335 are separated by 266 nucleotidesBPHYT_RS22335 and BPHYT_RS22340 are separated by 58 nucleotides BPHYT_RS22325: BPHYT_RS22325 - histidine kinase, at 561,635 to 563,134 _RS22325 BPHYT_RS22330: BPHYT_RS22330 - PhoB family transcriptional regulator, at 563,128 to 563,865 _RS22330 BPHYT_RS22335: BPHYT_RS22335 - cytochrome C biogenesis protein, at 564,132 to 566,012 _RS22335 BPHYT_RS22340: BPHYT_RS22340 - methionine sulfoxide reductase A, at 566,071 to 566,802 _RS22340 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -2 -1 0 1 2at 563.134 kb on + strandat 563.256 kb on + strand, within BPHYT_RS22330at 563.256 kb on + strand, within BPHYT_RS22330at 563.257 kb on - strand, within BPHYT_RS22330at 563.357 kb on + strand, within BPHYT_RS22330at 563.981 kb on + strandat 564.022 kb on + strandat 564.110 kb on + strandat 564.136 kb on + strandat 564.137 kb on - strandat 564.137 kb on - strandat 564.137 kb on - strandat 564.843 kb on - strand, within BPHYT_RS22335at 565.207 kb on - strand, within BPHYT_RS22335at 565.336 kb on - strand, within BPHYT_RS22335at 565.650 kb on + strand, within BPHYT_RS22335at 566.041 kb on + strandat 566.042 kb on - strandat 566.359 kb on + strand, within BPHYT_RS22340at 566.701 kb on + strand, within BPHYT_RS22340

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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563,134 + +2.6
563,256 + BPHYT_RS22330 0.17 -0.5
563,256 + BPHYT_RS22330 0.17 +0.2
563,257 - BPHYT_RS22330 0.17 -0.7
563,357 + BPHYT_RS22330 0.31 +1.5
563,981 + -0.8
564,022 + -1.0
564,110 + +0.3
564,136 + -0.1
564,137 - -0.8
564,137 - -1.0
564,137 - +1.9
564,843 - BPHYT_RS22335 0.38 -1.0
565,207 - BPHYT_RS22335 0.57 +0.0
565,336 - BPHYT_RS22335 0.64 +0.0
565,650 + BPHYT_RS22335 0.81 -0.9
566,041 + +0.2
566,042 - -2.1
566,359 + BPHYT_RS22340 0.39 +0.1
566,701 + BPHYT_RS22340 0.86 +0.3

Or see this region's nucleotide sequence