Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22245 and BPHYT_RS22250 are separated by 74 nucleotides BPHYT_RS22250 and BPHYT_RS22255 are separated by 5 nucleotides BPHYT_RS22255 and BPHYT_RS22260 are separated by 58 nucleotides BPHYT_RS22260 and BPHYT_RS22265 are separated by 106 nucleotides
BPHYT_RS22245: BPHYT_RS22245 - transporter for D-alanine, D-lactate, and pyruvate (MctP) <small>(from data)</small>, at 548,109 to 549,590
_RS22245
BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909
_RS22250
BPHYT_RS22255: BPHYT_RS22255 - hypothetical protein, at 550,915 to 551,259
_RS22255
BPHYT_RS22260: BPHYT_RS22260 - hypothetical protein, at 551,318 to 551,608
_RS22260
BPHYT_RS22265: BPHYT_RS22265 - hypothetical protein, at 551,715 to 552,506
_RS22265
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1
2 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.701 kb on - strand, within BPHYT_RS22245 at 548.781 kb on + strand, within BPHYT_RS22245 at 548.782 kb on - strand, within BPHYT_RS22245 at 548.892 kb on - strand, within BPHYT_RS22245 at 549.367 kb on - strand, within BPHYT_RS22245 at 549.501 kb on + strand at 549.501 kb on + strand at 549.502 kb on - strand at 549.502 kb on - strand at 549.857 kb on - strand, within BPHYT_RS22250 at 550.087 kb on - strand, within BPHYT_RS22250 at 550.917 kb on - strand at 550.917 kb on - strand at 550.919 kb on - strand at 550.919 kb on - strand at 551.070 kb on - strand, within BPHYT_RS22255 at 551.267 kb on + strand at 551.345 kb on + strand at 551.516 kb on - strand, within BPHYT_RS22260 at 551.606 kb on + strand at 551.607 kb on - strand at 551.623 kb on + strand at 551.715 kb on - strand at 551.768 kb on - strand at 551.768 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 548,700 + BPHYT_RS22245 0.40 -0.5 548,700 + BPHYT_RS22245 0.40 +0.4 548,700 + BPHYT_RS22245 0.40 -0.0 548,701 - BPHYT_RS22245 0.40 -1.7 548,781 + BPHYT_RS22245 0.45 +0.5 548,782 - BPHYT_RS22245 0.45 +1.2 548,892 - BPHYT_RS22245 0.53 +0.6 549,367 - BPHYT_RS22245 0.85 -1.5 549,501 + +1.7 549,501 + +0.6 549,502 - -0.6 549,502 - -0.8 549,857 - BPHYT_RS22250 0.15 -1.5 550,087 - BPHYT_RS22250 0.34 -0.5 550,917 - -2.1 550,917 - -0.9 550,919 - -1.3 550,919 - +1.0 551,070 - BPHYT_RS22255 0.45 -0.2 551,267 + +0.3 551,345 + +0.2 551,516 - BPHYT_RS22260 0.68 +0.5 551,606 + +0.6 551,607 - -0.5 551,623 + +0.0 551,715 - -1.5 551,768 - +2.0 551,768 - +0.8
Or see this region's nucleotide sequence