Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22000 and BPHYT_RS22005 are separated by 23 nucleotides BPHYT_RS22005 and BPHYT_RS22010 are separated by 39 nucleotides BPHYT_RS22010 and BPHYT_RS22015 overlap by 8 nucleotides
BPHYT_RS22000: BPHYT_RS22000 - hypothetical protein, at 491,743 to 492,105
_RS22000
BPHYT_RS22005: BPHYT_RS22005 - ABC transporter permease, at 492,129 to 492,923
_RS22005
BPHYT_RS22010: BPHYT_RS22010 - ABC transporter permease, at 492,963 to 493,877
_RS22010
BPHYT_RS22015: BPHYT_RS22015 - spermidine/putrescine ABC transporter ATPase, at 493,870 to 494,961
_RS22015
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.982 kb on + strand, within BPHYT_RS22000 at 492.164 kb on - strand at 492.256 kb on + strand, within BPHYT_RS22005 at 492.256 kb on + strand, within BPHYT_RS22005 at 492.256 kb on + strand, within BPHYT_RS22005 at 492.256 kb on + strand, within BPHYT_RS22005 at 492.262 kb on + strand, within BPHYT_RS22005 at 492.263 kb on - strand, within BPHYT_RS22005 at 492.588 kb on + strand, within BPHYT_RS22005 at 493.006 kb on + strand at 493.470 kb on + strand, within BPHYT_RS22010 at 493.549 kb on + strand, within BPHYT_RS22010 at 493.550 kb on - strand, within BPHYT_RS22010 at 493.569 kb on + strand, within BPHYT_RS22010 at 493.630 kb on + strand, within BPHYT_RS22010 at 493.634 kb on - strand, within BPHYT_RS22010 at 494.307 kb on - strand, within BPHYT_RS22015 at 494.325 kb on + strand, within BPHYT_RS22015 at 494.590 kb on - strand, within BPHYT_RS22015
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 491,982 + BPHYT_RS22000 0.66 +0.4 492,164 - +0.1 492,256 + BPHYT_RS22005 0.16 +2.1 492,256 + BPHYT_RS22005 0.16 -0.0 492,256 + BPHYT_RS22005 0.16 +2.0 492,256 + BPHYT_RS22005 0.16 -0.0 492,262 + BPHYT_RS22005 0.17 +0.8 492,263 - BPHYT_RS22005 0.17 +0.4 492,588 + BPHYT_RS22005 0.58 +1.4 493,006 + -0.6 493,470 + BPHYT_RS22010 0.55 +0.5 493,549 + BPHYT_RS22010 0.64 -1.9 493,550 - BPHYT_RS22010 0.64 -0.1 493,569 + BPHYT_RS22010 0.66 +0.9 493,630 + BPHYT_RS22010 0.73 +0.1 493,634 - BPHYT_RS22010 0.73 -0.6 494,307 - BPHYT_RS22015 0.40 -0.2 494,325 + BPHYT_RS22015 0.42 -1.4 494,590 - BPHYT_RS22015 0.66 -0.5
Or see this region's nucleotide sequence