Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21745

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS21740 and BPHYT_RS21745 are separated by 205 nucleotidesBPHYT_RS21745 and BPHYT_RS21750 are separated by 189 nucleotides BPHYT_RS21740: BPHYT_RS21740 - IclR family transcriptional regulator, at 433,809 to 434,645 _RS21740 BPHYT_RS21745: BPHYT_RS21745 - choline dehydrogenase, at 434,851 to 436,506 _RS21745 BPHYT_RS21750: BPHYT_RS21750 - major facilitator transporter, at 436,696 to 438,006 _RS21750 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -2 -1 0 1at 434.097 kb on - strand, within BPHYT_RS21740at 434.097 kb on - strand, within BPHYT_RS21740at 434.263 kb on + strand, within BPHYT_RS21740at 434.263 kb on + strand, within BPHYT_RS21740at 434.456 kb on - strandat 434.715 kb on + strandat 435.043 kb on + strand, within BPHYT_RS21745at 435.044 kb on - strand, within BPHYT_RS21745at 435.136 kb on + strand, within BPHYT_RS21745at 435.137 kb on - strand, within BPHYT_RS21745at 435.137 kb on - strand, within BPHYT_RS21745at 435.404 kb on - strand, within BPHYT_RS21745at 435.452 kb on - strand, within BPHYT_RS21745at 435.751 kb on + strand, within BPHYT_RS21745at 435.752 kb on - strand, within BPHYT_RS21745at 435.992 kb on - strand, within BPHYT_RS21745at 436.082 kb on - strand, within BPHYT_RS21745at 436.269 kb on + strand, within BPHYT_RS21745at 436.392 kb on + strandat 436.583 kb on - strandat 436.583 kb on - strandat 436.608 kb on - strandat 436.659 kb on + strandat 436.696 kb on - strandat 437.116 kb on + strand, within BPHYT_RS21750at 437.299 kb on + strand, within BPHYT_RS21750at 437.432 kb on - strand, within BPHYT_RS21750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
remove
434,097 - BPHYT_RS21740 0.34 -0.8
434,097 - BPHYT_RS21740 0.34 -1.5
434,263 + BPHYT_RS21740 0.54 -1.2
434,263 + BPHYT_RS21740 0.54 -1.0
434,456 - -1.6
434,715 + -1.9
435,043 + BPHYT_RS21745 0.12 +0.6
435,044 - BPHYT_RS21745 0.12 -1.5
435,136 + BPHYT_RS21745 0.17 -0.3
435,137 - BPHYT_RS21745 0.17 -1.8
435,137 - BPHYT_RS21745 0.17 -1.1
435,404 - BPHYT_RS21745 0.33 -0.6
435,452 - BPHYT_RS21745 0.36 -0.8
435,751 + BPHYT_RS21745 0.54 -1.1
435,752 - BPHYT_RS21745 0.54 -0.9
435,992 - BPHYT_RS21745 0.69 +0.1
436,082 - BPHYT_RS21745 0.74 +1.5
436,269 + BPHYT_RS21745 0.86 +0.7
436,392 + -1.6
436,583 - +0.3
436,583 - +0.2
436,608 - +0.7
436,659 + -2.3
436,696 - -1.6
437,116 + BPHYT_RS21750 0.32 -1.4
437,299 + BPHYT_RS21750 0.46 -1.3
437,432 - BPHYT_RS21750 0.56 -2.3

Or see this region's nucleotide sequence