Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21660 and BPHYT_RS21665 are separated by 12 nucleotides BPHYT_RS21665 and BPHYT_RS21670 are separated by 283 nucleotides BPHYT_RS21670 and BPHYT_RS21675 are separated by 49 nucleotides BPHYT_RS21675 and BPHYT_RS21680 are separated by 269 nucleotides
BPHYT_RS21660: BPHYT_RS21660 - sodium:solute symporter, at 414,298 to 415,683
_RS21660
BPHYT_RS21665: BPHYT_RS21665 - hypothetical protein, at 415,696 to 415,905
_RS21665
BPHYT_RS21670: BPHYT_RS21670 - transcriptional regulator, at 416,189 to 416,599
_RS21670
BPHYT_RS21675: BPHYT_RS21675 - FAD-dependent oxidoreductase, at 416,649 to 418,028
_RS21675
BPHYT_RS21680: BPHYT_RS21680 - amino acid permease-associated protein, at 418,298 to 419,728
_RS21680
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 415.698 kb on - strand at 415.800 kb on - strand, within BPHYT_RS21665 at 415.872 kb on - strand, within BPHYT_RS21665 at 415.968 kb on - strand at 416.166 kb on + strand at 416.746 kb on - strand at 417.597 kb on + strand, within BPHYT_RS21675 at 417.600 kb on + strand, within BPHYT_RS21675 at 417.601 kb on - strand, within BPHYT_RS21675 at 417.822 kb on + strand, within BPHYT_RS21675 at 417.823 kb on - strand, within BPHYT_RS21675 at 417.825 kb on + strand, within BPHYT_RS21675 at 417.826 kb on - strand, within BPHYT_RS21675 at 417.993 kb on + strand at 417.993 kb on + strand at 417.994 kb on - strand at 417.994 kb on - strand at 417.994 kb on - strand at 418.310 kb on - strand at 418.310 kb on - strand at 418.538 kb on + strand at 418.538 kb on + strand, within BPHYT_RS21680 at 418.607 kb on + strand, within BPHYT_RS21680 at 418.758 kb on - strand, within BPHYT_RS21680 at 418.832 kb on + strand, within BPHYT_RS21680 at 418.832 kb on + strand, within BPHYT_RS21680 at 418.832 kb on + strand, within BPHYT_RS21680 at 418.833 kb on - strand, within BPHYT_RS21680 at 418.833 kb on - strand, within BPHYT_RS21680
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 415,698 - +0.2 415,800 - BPHYT_RS21665 0.50 -0.0 415,872 - BPHYT_RS21665 0.84 -0.7 415,968 - +0.9 416,166 + +0.9 416,746 - -3.2 417,597 + BPHYT_RS21675 0.69 -4.7 417,600 + BPHYT_RS21675 0.69 -0.3 417,601 - BPHYT_RS21675 0.69 -3.1 417,822 + BPHYT_RS21675 0.85 +0.3 417,823 - BPHYT_RS21675 0.85 -2.3 417,825 + BPHYT_RS21675 0.85 -1.8 417,826 - BPHYT_RS21675 0.85 -3.7 417,993 + -1.6 417,993 + -3.5 417,994 - -1.8 417,994 - -3.4 417,994 - -3.6 418,310 - +0.1 418,310 - -0.6 418,538 + +2.0 418,538 + BPHYT_RS21680 0.17 -2.3 418,607 + BPHYT_RS21680 0.22 +1.1 418,758 - BPHYT_RS21680 0.32 -1.1 418,832 + BPHYT_RS21680 0.37 +1.0 418,832 + BPHYT_RS21680 0.37 -0.5 418,832 + BPHYT_RS21680 0.37 +0.2 418,833 - BPHYT_RS21680 0.37 -0.0 418,833 - BPHYT_RS21680 0.37 -1.8
Or see this region's nucleotide sequence