Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21555 and BPHYT_RS21560 are separated by 258 nucleotides BPHYT_RS21560 and BPHYT_RS21565 are separated by 9 nucleotides
BPHYT_RS21555: BPHYT_RS21555 - beta alanine--pyruvate aminotransferase, at 394,320 to 395,648
_RS21555
BPHYT_RS21560: BPHYT_RS21560 - GntR family transcriptional regulator, at 395,907 to 397,322
_RS21560
BPHYT_RS21565: BPHYT_RS21565 - lysine transporter LysE, at 397,332 to 397,955
_RS21565
Position (kb) 395
396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 395.536 kb on + strand at 395.539 kb on + strand at 395.540 kb on - strand at 395.651 kb on + strand at 395.652 kb on - strand at 395.724 kb on + strand at 395.724 kb on + strand at 395.724 kb on + strand at 395.835 kb on + strand at 395.835 kb on + strand at 395.860 kb on - strand at 395.860 kb on - strand at 395.860 kb on - strand at 395.917 kb on + strand at 395.918 kb on - strand at 396.084 kb on + strand, within BPHYT_RS21560 at 396.085 kb on - strand, within BPHYT_RS21560 at 396.085 kb on - strand, within BPHYT_RS21560 at 396.354 kb on + strand, within BPHYT_RS21560 at 396.840 kb on + strand, within BPHYT_RS21560 at 396.888 kb on + strand, within BPHYT_RS21560 at 397.190 kb on + strand at 397.213 kb on - strand at 397.213 kb on - strand at 397.258 kb on + strand at 397.259 kb on - strand at 397.292 kb on + strand at 397.320 kb on + strand at 397.499 kb on - strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.534 kb on + strand, within BPHYT_RS21565 at 397.693 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.732 kb on + strand, within BPHYT_RS21565 at 397.733 kb on - strand, within BPHYT_RS21565 at 397.948 kb on + strand at 397.948 kb on + strand at 397.948 kb on + strand at 397.949 kb on - strand at 397.997 kb on - strand at 398.167 kb on + strand at 398.168 kb on - strand at 398.168 kb on - strand at 398.170 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 395,536 + -1.7 395,539 + -1.0 395,540 - -0.7 395,651 + +3.0 395,652 - +0.6 395,724 + +0.9 395,724 + -1.4 395,724 + -1.5 395,835 + -0.9 395,835 + +1.3 395,860 - -2.2 395,860 - +1.6 395,860 - +0.9 395,917 + -0.3 395,918 - +0.7 396,084 + BPHYT_RS21560 0.12 +0.8 396,085 - BPHYT_RS21560 0.13 -2.9 396,085 - BPHYT_RS21560 0.13 -1.1 396,354 + BPHYT_RS21560 0.32 -0.2 396,840 + BPHYT_RS21560 0.66 -0.6 396,888 + BPHYT_RS21560 0.69 -0.3 397,190 + +0.3 397,213 - -1.5 397,213 - -0.6 397,258 + +0.3 397,259 - -1.9 397,292 + -1.2 397,320 + +0.4 397,499 - BPHYT_RS21565 0.27 +0.2 397,534 + BPHYT_RS21565 0.32 +0.6 397,534 + BPHYT_RS21565 0.32 -0.6 397,534 + BPHYT_RS21565 0.32 +0.9 397,693 + BPHYT_RS21565 0.58 +0.5 397,732 + BPHYT_RS21565 0.64 +0.1 397,732 + BPHYT_RS21565 0.64 +0.1 397,733 - BPHYT_RS21565 0.64 +0.2 397,948 + +1.2 397,948 + -0.2 397,948 + -0.0 397,949 - +0.4 397,997 - +0.3 398,167 + +1.0 398,168 - +0.2 398,168 - -1.5 398,170 - -1.3
Or see this region's nucleotide sequence