Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21460

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21455 and BPHYT_RS21460 are separated by 66 nucleotidesBPHYT_RS21460 and BPHYT_RS21465 are separated by 21 nucleotides BPHYT_RS21455: BPHYT_RS21455 - type 11 methyltransferase, at 373,209 to 374,396 _RS21455 BPHYT_RS21460: BPHYT_RS21460 - UDP-N-acetylglucosamine 2-epimerase, at 374,463 to 375,566 _RS21460 BPHYT_RS21465: BPHYT_RS21465 - TetR family transcriptional regulator, at 375,588 to 376,316 _RS21465 Position (kb) 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 373.789 kb on + strand, within BPHYT_RS21455at 373.801 kb on - strand, within BPHYT_RS21455at 374.006 kb on + strand, within BPHYT_RS21455at 374.213 kb on + strand, within BPHYT_RS21455at 374.213 kb on + strand, within BPHYT_RS21455at 374.438 kb on - strandat 375.190 kb on + strand, within BPHYT_RS21460at 375.255 kb on + strand, within BPHYT_RS21460at 375.474 kb on + strandat 375.536 kb on - strandat 375.763 kb on + strand, within BPHYT_RS21465at 375.784 kb on + strand, within BPHYT_RS21465at 375.992 kb on - strand, within BPHYT_RS21465at 376.087 kb on + strand, within BPHYT_RS21465at 376.141 kb on + strand, within BPHYT_RS21465at 376.178 kb on + strand, within BPHYT_RS21465at 376.201 kb on + strand, within BPHYT_RS21465at 376.449 kb on - strandat 376.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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373,789 + BPHYT_RS21455 0.49 +0.5
373,801 - BPHYT_RS21455 0.50 +0.7
374,006 + BPHYT_RS21455 0.67 +0.5
374,213 + BPHYT_RS21455 0.85 +1.0
374,213 + BPHYT_RS21455 0.85 +0.8
374,438 - -2.5
375,190 + BPHYT_RS21460 0.66 -0.1
375,255 + BPHYT_RS21460 0.72 +3.3
375,474 + -0.6
375,536 - -0.6
375,763 + BPHYT_RS21465 0.24 -1.0
375,784 + BPHYT_RS21465 0.27 -3.0
375,992 - BPHYT_RS21465 0.55 -1.3
376,087 + BPHYT_RS21465 0.68 -3.2
376,141 + BPHYT_RS21465 0.76 +0.4
376,178 + BPHYT_RS21465 0.81 -0.0
376,201 + BPHYT_RS21465 0.84 -1.5
376,449 - -0.3
376,465 - -0.4

Or see this region's nucleotide sequence