Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21230 and BPHYT_RS21235 are separated by 154 nucleotides BPHYT_RS21235 and BPHYT_RS21240 overlap by 17 nucleotides BPHYT_RS21240 and BPHYT_RS21245 are separated by 688 nucleotides
BPHYT_RS21230: BPHYT_RS21230 - acyl-homoserine-lactone synthase, at 324,705 to 325,298
_RS21230
BPHYT_RS21235: BPHYT_RS21235 - hypothetical protein, at 325,453 to 325,770
_RS21235
BPHYT_RS21240: BPHYT_RS21240 - LuxR family transcriptional regulator, at 325,754 to 326,458
_RS21240
BPHYT_RS21245: BPHYT_RS21245 - gluconolactonase, at 327,147 to 328,088
_RS21245
Position (kb) 325
326
327 Strain fitness (log2 ratio) -1
0
1
2
3 at 324.878 kb on - strand, within BPHYT_RS21230 at 325.135 kb on + strand, within BPHYT_RS21230 at 325.136 kb on - strand, within BPHYT_RS21230 at 325.136 kb on - strand, within BPHYT_RS21230 at 325.191 kb on - strand, within BPHYT_RS21230 at 325.234 kb on + strand, within BPHYT_RS21230 at 325.235 kb on - strand, within BPHYT_RS21230 at 325.235 kb on - strand, within BPHYT_RS21230 at 325.235 kb on - strand, within BPHYT_RS21230 at 325.235 kb on - strand, within BPHYT_RS21230 at 325.235 kb on - strand, within BPHYT_RS21230 at 325.370 kb on + strand at 325.370 kb on + strand at 325.370 kb on + strand at 325.371 kb on - strand at 325.371 kb on - strand at 325.371 kb on - strand at 325.371 kb on - strand at 325.375 kb on - strand at 325.375 kb on - strand at 325.383 kb on - strand at 325.383 kb on - strand at 325.549 kb on + strand, within BPHYT_RS21235 at 325.675 kb on + strand, within BPHYT_RS21235 at 325.768 kb on + strand at 325.769 kb on - strand at 325.769 kb on - strand at 325.947 kb on - strand, within BPHYT_RS21240 at 325.947 kb on - strand, within BPHYT_RS21240 at 326.003 kb on + strand, within BPHYT_RS21240 at 326.048 kb on - strand, within BPHYT_RS21240 at 326.048 kb on - strand, within BPHYT_RS21240 at 326.172 kb on + strand, within BPHYT_RS21240 at 326.173 kb on - strand, within BPHYT_RS21240 at 326.286 kb on + strand, within BPHYT_RS21240 at 326.286 kb on + strand, within BPHYT_RS21240 at 326.287 kb on - strand, within BPHYT_RS21240 at 326.290 kb on + strand, within BPHYT_RS21240 at 326.290 kb on + strand, within BPHYT_RS21240 at 326.290 kb on + strand, within BPHYT_RS21240 at 326.310 kb on + strand, within BPHYT_RS21240 at 326.310 kb on + strand, within BPHYT_RS21240 at 326.310 kb on + strand at 326.310 kb on + strand, within BPHYT_RS21240 at 326.314 kb on + strand, within BPHYT_RS21240 at 326.314 kb on + strand, within BPHYT_RS21240 at 326.314 kb on + strand, within BPHYT_RS21240 at 326.315 kb on - strand, within BPHYT_RS21240 at 326.325 kb on + strand, within BPHYT_RS21240 at 326.326 kb on - strand, within BPHYT_RS21240 at 326.326 kb on - strand, within BPHYT_RS21240 at 326.326 kb on - strand, within BPHYT_RS21240 at 326.563 kb on + strand at 326.563 kb on + strand at 326.569 kb on - strand at 326.700 kb on + strand at 326.700 kb on + strand at 326.753 kb on - strand at 326.768 kb on + strand at 326.853 kb on + strand at 326.874 kb on + strand at 326.900 kb on + strand at 326.994 kb on + strand at 327.246 kb on + strand, within BPHYT_RS21245 at 327.247 kb on - strand, within BPHYT_RS21245 at 327.304 kb on + strand, within BPHYT_RS21245 at 327.304 kb on + strand, within BPHYT_RS21245 at 327.402 kb on - strand, within BPHYT_RS21245
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 324,878 - BPHYT_RS21230 0.29 -1.0 325,135 + BPHYT_RS21230 0.72 +1.4 325,136 - BPHYT_RS21230 0.73 +0.1 325,136 - BPHYT_RS21230 0.73 -0.6 325,191 - BPHYT_RS21230 0.82 -0.6 325,234 + BPHYT_RS21230 0.89 +0.4 325,235 - BPHYT_RS21230 0.89 +1.0 325,235 - BPHYT_RS21230 0.89 +1.2 325,235 - BPHYT_RS21230 0.89 +0.1 325,235 - BPHYT_RS21230 0.89 +0.2 325,235 - BPHYT_RS21230 0.89 -0.5 325,370 + +0.6 325,370 + +1.3 325,370 + +1.6 325,371 - +0.1 325,371 - +0.8 325,371 - -0.4 325,371 - +0.5 325,375 - +0.6 325,375 - +2.1 325,383 - -0.5 325,383 - +1.8 325,549 + BPHYT_RS21235 0.30 -0.3 325,675 + BPHYT_RS21235 0.70 -1.7 325,768 + +2.0 325,769 - +1.0 325,769 - +1.3 325,947 - BPHYT_RS21240 0.27 +0.2 325,947 - BPHYT_RS21240 0.27 +1.2 326,003 + BPHYT_RS21240 0.35 +2.3 326,048 - BPHYT_RS21240 0.42 +3.0 326,048 - BPHYT_RS21240 0.42 -0.2 326,172 + BPHYT_RS21240 0.59 +0.6 326,173 - BPHYT_RS21240 0.59 +1.7 326,286 + BPHYT_RS21240 0.75 +1.0 326,286 + BPHYT_RS21240 0.75 +1.0 326,287 - BPHYT_RS21240 0.76 +1.2 326,290 + BPHYT_RS21240 0.76 +1.1 326,290 + BPHYT_RS21240 0.76 +0.7 326,290 + BPHYT_RS21240 0.76 +0.6 326,310 + BPHYT_RS21240 0.79 +1.2 326,310 + BPHYT_RS21240 0.79 +1.5 326,310 + +1.5 326,310 + BPHYT_RS21240 0.79 +1.2 326,314 + BPHYT_RS21240 0.79 -0.2 326,314 + BPHYT_RS21240 0.79 +0.3 326,314 + BPHYT_RS21240 0.79 +0.2 326,315 - BPHYT_RS21240 0.80 +1.4 326,325 + BPHYT_RS21240 0.81 +0.6 326,326 - BPHYT_RS21240 0.81 -0.4 326,326 - BPHYT_RS21240 0.81 +1.9 326,326 - BPHYT_RS21240 0.81 +0.4 326,563 + +1.1 326,563 + +0.5 326,569 - -1.0 326,700 + +0.5 326,700 + +2.3 326,753 - -0.6 326,768 + +1.0 326,853 + -0.1 326,874 + -0.4 326,900 + +0.6 326,994 + -0.4 327,246 + BPHYT_RS21245 0.11 +0.1 327,247 - BPHYT_RS21245 0.11 +1.6 327,304 + BPHYT_RS21245 0.17 -0.2 327,304 + BPHYT_RS21245 0.17 -1.2 327,402 - BPHYT_RS21245 0.27 -0.0
Or see this region's nucleotide sequence