Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20800

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20795 and BPHYT_RS20800 are separated by 95 nucleotidesBPHYT_RS20800 and BPHYT_RS20805 are separated by 126 nucleotides BPHYT_RS20795: BPHYT_RS20795 - sorbosone dehydrogenase, at 227,041 to 228,549 _RS20795 BPHYT_RS20800: BPHYT_RS20800 - alanine-phosphoribitol ligase, at 228,645 to 230,318 _RS20800 BPHYT_RS20805: BPHYT_RS20805 - LacI family transcriptional regulator, at 230,445 to 231,524 _RS20805 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 227.742 kb on + strand, within BPHYT_RS20795at 227.742 kb on + strand, within BPHYT_RS20795at 227.743 kb on - strand, within BPHYT_RS20795at 228.270 kb on + strand, within BPHYT_RS20795at 228.491 kb on - strandat 228.491 kb on - strandat 228.622 kb on - strandat 228.648 kb on + strandat 228.648 kb on + strandat 228.648 kb on + strandat 228.648 kb on + strandat 228.654 kb on + strandat 228.654 kb on + strandat 228.765 kb on + strandat 228.767 kb on + strandat 228.943 kb on - strand, within BPHYT_RS20800at 229.143 kb on + strand, within BPHYT_RS20800at 229.143 kb on + strand, within BPHYT_RS20800at 229.565 kb on + strand, within BPHYT_RS20800at 229.565 kb on + strand, within BPHYT_RS20800at 229.565 kb on + strand, within BPHYT_RS20800at 229.791 kb on + strand, within BPHYT_RS20800at 230.020 kb on - strand, within BPHYT_RS20800at 230.369 kb on - strandat 230.817 kb on + strand, within BPHYT_RS20805at 230.817 kb on + strand, within BPHYT_RS20805at 230.818 kb on - strand, within BPHYT_RS20805

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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227,742 + BPHYT_RS20795 0.46 +0.7
227,742 + BPHYT_RS20795 0.46 -0.0
227,743 - BPHYT_RS20795 0.47 -3.7
228,270 + BPHYT_RS20795 0.81 -1.4
228,491 - -1.8
228,491 - +0.9
228,622 - +0.8
228,648 + -0.4
228,648 + -0.0
228,648 + +0.9
228,648 + -0.1
228,654 + -2.9
228,654 + -0.7
228,765 + -0.7
228,767 + -0.1
228,943 - BPHYT_RS20800 0.18 +0.4
229,143 + BPHYT_RS20800 0.30 -1.2
229,143 + BPHYT_RS20800 0.30 +0.6
229,565 + BPHYT_RS20800 0.55 -0.4
229,565 + BPHYT_RS20800 0.55 +0.7
229,565 + BPHYT_RS20800 0.55 +1.0
229,791 + BPHYT_RS20800 0.68 -0.4
230,020 - BPHYT_RS20800 0.82 +0.9
230,369 - -0.4
230,817 + BPHYT_RS20805 0.34 -1.4
230,817 + BPHYT_RS20805 0.34 +9.6
230,818 - BPHYT_RS20805 0.35 +0.6

Or see this region's nucleotide sequence