Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20790

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20785 and BPHYT_RS20790 are separated by 130 nucleotidesBPHYT_RS20790 and BPHYT_RS20795 are separated by 246 nucleotides BPHYT_RS20785: BPHYT_RS20785 - CoA-transferase, at 224,526 to 226,013 _RS20785 BPHYT_RS20790: BPHYT_RS20790 - TetR family transcriptional regulator, at 226,144 to 226,794 _RS20790 BPHYT_RS20795: BPHYT_RS20795 - sorbosone dehydrogenase, at 227,041 to 228,549 _RS20795 Position (kb) 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 225.180 kb on + strand, within BPHYT_RS20785at 225.180 kb on + strand, within BPHYT_RS20785at 225.181 kb on - strand, within BPHYT_RS20785at 225.181 kb on - strand, within BPHYT_RS20785at 225.830 kb on + strand, within BPHYT_RS20785at 225.876 kb on + strandat 225.876 kb on + strandat 225.876 kb on + strandat 225.974 kb on + strandat 225.975 kb on - strandat 226.571 kb on + strand, within BPHYT_RS20790at 226.625 kb on + strand, within BPHYT_RS20790at 226.897 kb on - strandat 227.425 kb on + strand, within BPHYT_RS20795at 227.634 kb on + strand, within BPHYT_RS20795at 227.635 kb on - strand, within BPHYT_RS20795at 227.742 kb on + strand, within BPHYT_RS20795at 227.742 kb on + strand, within BPHYT_RS20795at 227.743 kb on - strand, within BPHYT_RS20795

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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225,180 + BPHYT_RS20785 0.44 +0.2
225,180 + BPHYT_RS20785 0.44 +0.4
225,181 - BPHYT_RS20785 0.44 +0.4
225,181 - BPHYT_RS20785 0.44 +0.2
225,830 + BPHYT_RS20785 0.88 -1.4
225,876 + +0.4
225,876 + +0.4
225,876 + -0.4
225,974 + -0.8
225,975 - -1.2
226,571 + BPHYT_RS20790 0.66 +5.4
226,625 + BPHYT_RS20790 0.74 +3.3
226,897 - +2.5
227,425 + BPHYT_RS20795 0.25 +0.2
227,634 + BPHYT_RS20795 0.39 +1.7
227,635 - BPHYT_RS20795 0.39 -1.7
227,742 + BPHYT_RS20795 0.46 +0.7
227,742 + BPHYT_RS20795 0.46 -0.0
227,743 - BPHYT_RS20795 0.47 -3.7

Or see this region's nucleotide sequence