Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20695

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20690 and BPHYT_RS20695 are separated by 138 nucleotidesBPHYT_RS20695 and BPHYT_RS20700 are separated by 122 nucleotides BPHYT_RS20690: BPHYT_RS20690 - ABC transporter permease, at 202,328 to 203,329 _RS20690 BPHYT_RS20695: BPHYT_RS20695 - ribokinase, at 203,468 to 204,400 _RS20695 BPHYT_RS20700: BPHYT_RS20700 - nucleoside hydrolase, at 204,523 to 205,626 _RS20700 Position (kb) 203 204 205Strain fitness (log2 ratio) -1 0 1 2at 202.488 kb on - strand, within BPHYT_RS20690at 202.816 kb on + strand, within BPHYT_RS20690at 203.299 kb on + strandat 203.426 kb on - strandat 203.426 kb on - strandat 204.167 kb on + strand, within BPHYT_RS20695at 204.167 kb on + strand, within BPHYT_RS20695at 205.263 kb on + strand, within BPHYT_RS20700

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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202,488 - BPHYT_RS20690 0.16 -0.8
202,816 + BPHYT_RS20690 0.49 +0.8
203,299 + +0.3
203,426 - +0.4
203,426 - +0.3
204,167 + BPHYT_RS20695 0.75 +2.3
204,167 + BPHYT_RS20695 0.75 +0.9
205,263 + BPHYT_RS20700 0.67 +0.2

Or see this region's nucleotide sequence