Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20560 and BPHYT_RS20565 are separated by 70 nucleotides BPHYT_RS20565 and BPHYT_RS20570 are separated by 261 nucleotides BPHYT_RS20570 and BPHYT_RS20575 are separated by 101 nucleotides BPHYT_RS20575 and BPHYT_RS20580 are separated by 33 nucleotides
BPHYT_RS20560: BPHYT_RS20560 - sugar ABC transporter substrate-binding protein, at 174,490 to 175,440
_RS20560
BPHYT_RS20565: BPHYT_RS20565 - photosystem reaction center subunit H, at 175,511 to 175,942
_RS20565
BPHYT_RS20570: BPHYT_RS20570 - heptosyltransferase, at 176,204 to 177,379
_RS20570
BPHYT_RS20575: BPHYT_RS20575 - ester cyclase, at 177,481 to 177,885
_RS20575
BPHYT_RS20580: BPHYT_RS20580 - NADH dehydrogenase, at 177,919 to 179,145
_RS20580
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 175.234 kb on + strand, within BPHYT_RS20560 at 175.246 kb on + strand, within BPHYT_RS20560 at 175.561 kb on - strand, within BPHYT_RS20565 at 175.659 kb on + strand, within BPHYT_RS20565 at 175.659 kb on + strand, within BPHYT_RS20565 at 175.660 kb on - strand, within BPHYT_RS20565 at 175.704 kb on + strand, within BPHYT_RS20565 at 175.965 kb on + strand at 175.966 kb on - strand at 176.048 kb on - strand at 176.258 kb on + strand at 176.526 kb on + strand, within BPHYT_RS20570 at 176.600 kb on + strand, within BPHYT_RS20570 at 176.601 kb on - strand, within BPHYT_RS20570 at 177.388 kb on + strand at 177.508 kb on + strand at 177.517 kb on + strand at 177.562 kb on + strand, within BPHYT_RS20575 at 177.563 kb on - strand, within BPHYT_RS20575 at 177.584 kb on - strand, within BPHYT_RS20575 at 177.584 kb on - strand, within BPHYT_RS20575 at 177.584 kb on - strand, within BPHYT_RS20575 at 177.658 kb on + strand, within BPHYT_RS20575 at 177.659 kb on - strand, within BPHYT_RS20575 at 177.695 kb on - strand at 177.697 kb on - strand, within BPHYT_RS20575 at 178.007 kb on + strand at 178.011 kb on + strand at 178.011 kb on + strand at 178.011 kb on + strand at 178.012 kb on - strand at 178.012 kb on - strand at 178.015 kb on + strand at 178.015 kb on + strand at 178.140 kb on + strand, within BPHYT_RS20580 at 178.285 kb on + strand, within BPHYT_RS20580
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 175,234 + BPHYT_RS20560 0.78 -0.6 175,246 + BPHYT_RS20560 0.79 -0.1 175,561 - BPHYT_RS20565 0.12 +1.0 175,659 + BPHYT_RS20565 0.34 +0.4 175,659 + BPHYT_RS20565 0.34 -0.2 175,660 - BPHYT_RS20565 0.34 +1.4 175,704 + BPHYT_RS20565 0.45 -0.7 175,965 + -1.3 175,966 - -0.8 176,048 - +0.1 176,258 + -0.4 176,526 + BPHYT_RS20570 0.27 +1.7 176,600 + BPHYT_RS20570 0.34 +0.2 176,601 - BPHYT_RS20570 0.34 +0.8 177,388 + -0.2 177,508 + -1.0 177,517 + +0.9 177,562 + BPHYT_RS20575 0.20 +0.5 177,563 - BPHYT_RS20575 0.20 +0.5 177,584 - BPHYT_RS20575 0.25 +3.0 177,584 - BPHYT_RS20575 0.25 -0.2 177,584 - BPHYT_RS20575 0.25 +0.9 177,658 + BPHYT_RS20575 0.44 +0.2 177,659 - BPHYT_RS20575 0.44 -1.3 177,695 - -0.4 177,697 - BPHYT_RS20575 0.53 +1.0 178,007 + +0.4 178,011 + +0.5 178,011 + -1.7 178,011 + -0.6 178,012 - +2.5 178,012 - +1.4 178,015 + -1.6 178,015 + -1.9 178,140 + BPHYT_RS20580 0.18 -1.9 178,285 + BPHYT_RS20580 0.30 +0.1
Or see this region's nucleotide sequence