Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20350 and BPHYT_RS20355 are separated by 29 nucleotides BPHYT_RS20355 and BPHYT_RS20360 are separated by 1 nucleotides BPHYT_RS20360 and BPHYT_RS20365 are separated by 25 nucleotides
BPHYT_RS20350: BPHYT_RS20350 - citrate transporter, at 128,270 to 129,574
_RS20350
BPHYT_RS20355: BPHYT_RS20355 - ABC transporter substrate-binding protein, at 129,604 to 130,962
_RS20355
BPHYT_RS20360: BPHYT_RS20360 - beta-lactamase, at 130,964 to 131,278
_RS20360
BPHYT_RS20365: BPHYT_RS20365 - LysR family transcriptional regulator, at 131,304 to 132,221
_RS20365
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.829 kb on + strand, within BPHYT_RS20350 at 128.829 kb on + strand, within BPHYT_RS20350 at 128.953 kb on + strand, within BPHYT_RS20350 at 129.078 kb on - strand at 129.317 kb on + strand, within BPHYT_RS20350 at 129.627 kb on + strand at 129.628 kb on - strand at 129.670 kb on - strand at 130.033 kb on + strand, within BPHYT_RS20355 at 130.033 kb on + strand, within BPHYT_RS20355 at 130.262 kb on - strand, within BPHYT_RS20355 at 130.576 kb on + strand, within BPHYT_RS20355 at 130.842 kb on + strand at 131.012 kb on - strand, within BPHYT_RS20360 at 131.036 kb on + strand at 131.037 kb on - strand, within BPHYT_RS20360 at 131.051 kb on + strand, within BPHYT_RS20360 at 131.285 kb on + strand at 131.285 kb on + strand at 131.288 kb on - strand at 131.404 kb on + strand, within BPHYT_RS20365 at 131.491 kb on + strand, within BPHYT_RS20365
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 128,829 + BPHYT_RS20350 0.43 -0.5 128,829 + BPHYT_RS20350 0.43 +0.6 128,953 + BPHYT_RS20350 0.52 +1.5 129,078 - +2.3 129,317 + BPHYT_RS20350 0.80 -0.6 129,627 + +0.6 129,628 - +0.2 129,670 - -0.2 130,033 + BPHYT_RS20355 0.32 -1.3 130,033 + BPHYT_RS20355 0.32 -0.6 130,262 - BPHYT_RS20355 0.48 +2.0 130,576 + BPHYT_RS20355 0.72 -2.5 130,842 + -0.3 131,012 - BPHYT_RS20360 0.15 +1.4 131,036 + +1.8 131,037 - BPHYT_RS20360 0.23 +0.1 131,051 + BPHYT_RS20360 0.28 -0.5 131,285 + +0.2 131,285 + +2.5 131,288 - +0.4 131,404 + BPHYT_RS20365 0.11 +0.5 131,491 + BPHYT_RS20365 0.20 -0.0
Or see this region's nucleotide sequence