Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20325 and BPHYT_RS20330 are separated by 266 nucleotides BPHYT_RS20330 and BPHYT_RS20335 are separated by 102 nucleotides
BPHYT_RS20325: BPHYT_RS20325 - acyl-CoA dehydrogenase, at 122,918 to 124,084
_RS20325
BPHYT_RS20330: BPHYT_RS20330 - IclR family transcriptional regulator, at 124,351 to 125,130
_RS20330
BPHYT_RS20335: BPHYT_RS20335 - hypothetical protein, at 125,233 to 126,573
_RS20335
Position (kb) 124
125
126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 123.365 kb on + strand, within BPHYT_RS20325 at 123.366 kb on - strand, within BPHYT_RS20325 at 123.529 kb on + strand, within BPHYT_RS20325 at 123.530 kb on - strand, within BPHYT_RS20325 at 123.676 kb on - strand, within BPHYT_RS20325 at 123.676 kb on - strand, within BPHYT_RS20325 at 124.008 kb on - strand at 124.141 kb on - strand at 124.141 kb on - strand at 124.177 kb on - strand at 124.504 kb on - strand, within BPHYT_RS20330 at 124.507 kb on + strand, within BPHYT_RS20330 at 124.508 kb on - strand, within BPHYT_RS20330 at 124.508 kb on - strand, within BPHYT_RS20330 at 124.552 kb on - strand, within BPHYT_RS20330 at 124.708 kb on + strand, within BPHYT_RS20330 at 124.731 kb on + strand, within BPHYT_RS20330 at 124.896 kb on - strand, within BPHYT_RS20330 at 124.919 kb on - strand, within BPHYT_RS20330 at 124.942 kb on + strand, within BPHYT_RS20330 at 125.038 kb on + strand, within BPHYT_RS20330 at 125.303 kb on + strand at 125.357 kb on + strand at 125.357 kb on + strand at 125.358 kb on - strand at 125.371 kb on - strand, within BPHYT_RS20335 at 125.418 kb on + strand, within BPHYT_RS20335 at 125.470 kb on - strand, within BPHYT_RS20335 at 125.495 kb on + strand at 125.496 kb on - strand, within BPHYT_RS20335 at 125.496 kb on - strand, within BPHYT_RS20335 at 125.498 kb on + strand, within BPHYT_RS20335 at 125.595 kb on - strand, within BPHYT_RS20335 at 125.758 kb on - strand, within BPHYT_RS20335 at 125.834 kb on + strand, within BPHYT_RS20335 at 125.837 kb on + strand, within BPHYT_RS20335 at 125.838 kb on - strand, within BPHYT_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 123,365 + BPHYT_RS20325 0.38 +1.7 123,366 - BPHYT_RS20325 0.38 -0.5 123,529 + BPHYT_RS20325 0.52 -0.2 123,530 - BPHYT_RS20325 0.52 -1.9 123,676 - BPHYT_RS20325 0.65 +1.0 123,676 - BPHYT_RS20325 0.65 +0.8 124,008 - +1.2 124,141 - +2.0 124,141 - +2.0 124,177 - +0.5 124,504 - BPHYT_RS20330 0.20 +1.1 124,507 + BPHYT_RS20330 0.20 +0.6 124,508 - BPHYT_RS20330 0.20 -1.4 124,508 - BPHYT_RS20330 0.20 -1.3 124,552 - BPHYT_RS20330 0.26 -0.4 124,708 + BPHYT_RS20330 0.46 +1.1 124,731 + BPHYT_RS20330 0.49 -0.6 124,896 - BPHYT_RS20330 0.70 -0.6 124,919 - BPHYT_RS20330 0.73 +0.4 124,942 + BPHYT_RS20330 0.76 +0.3 125,038 + BPHYT_RS20330 0.88 -0.3 125,303 + +1.0 125,357 + +1.0 125,357 + -0.2 125,358 - -0.6 125,371 - BPHYT_RS20335 0.10 -1.4 125,418 + BPHYT_RS20335 0.14 +0.7 125,470 - BPHYT_RS20335 0.18 -0.5 125,495 + -0.6 125,496 - BPHYT_RS20335 0.20 -0.1 125,496 - BPHYT_RS20335 0.20 -0.6 125,498 + BPHYT_RS20335 0.20 -0.2 125,595 - BPHYT_RS20335 0.27 +0.7 125,758 - BPHYT_RS20335 0.39 +1.0 125,834 + BPHYT_RS20335 0.45 -0.6 125,837 + BPHYT_RS20335 0.45 -0.6 125,838 - BPHYT_RS20335 0.45 -0.5
Or see this region's nucleotide sequence