Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19675

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,426,100	+		BPHYT_RS19670	0.50	+0.6
4,426,101	-		BPHYT_RS19670	0.50	-1.6
4,426,142	+		BPHYT_RS19670	0.53	+0.6
4,426,194	+		BPHYT_RS19670	0.56	+0.8
4,426,252	+		BPHYT_RS19670	0.60	-0.5
4,426,252	+		BPHYT_RS19670	0.60	+0.6
4,426,253	-		BPHYT_RS19670	0.60	+0.9
4,426,503	+		BPHYT_RS19670	0.76	-1.6
4,426,503	+		BPHYT_RS19670	0.76	-0.1
4,426,607	-		BPHYT_RS19670	0.82	-0.2
4,426,607	-		BPHYT_RS19670	0.82	-0.9
4,426,663	+		BPHYT_RS19670	0.86	-0.0
4,426,664	-		BPHYT_RS19670	0.86	+0.5
4,426,684	+		BPHYT_RS19670	0.87	+1.6
4,426,684	+		BPHYT_RS19670	0.87	+0.2
4,426,684	+		BPHYT_RS19670	0.87	-2.8
4,426,685	-		BPHYT_RS19670	0.87	+1.8
4,426,685	-		BPHYT_RS19670	0.87	-0.4
4,426,765	+				+0.5
4,426,765	+				-0.2
4,426,765	+				-0.2
4,426,765	+				-0.8
4,426,765	+				-0.2
4,426,765	+				+0.0
4,426,765	+				-0.2
4,426,766	-				+0.5
4,426,766	-				-0.6
4,426,766	-				+0.0
4,426,766	-				-1.4
4,426,767	+				-0.2
4,426,767	+				-1.6
4,426,767	+				-1.0
4,426,767	+				+2.4
4,426,767	+				+0.9
4,426,767	+				+0.1
4,426,767	+				-0.0
4,426,768	-				+0.5
4,426,768	-				+0.0
4,426,768	-				-0.2
4,426,768	-				+0.0
4,426,897	+				-0.2
4,426,920	+				+0.3
4,426,920	+				+0.4
4,427,090	+		BPHYT_RS19675	0.27	-0.8
4,427,090	+		BPHYT_RS19675	0.27	-0.7
4,427,090	+		BPHYT_RS19675	0.27	-0.3
4,427,504	-				+0.5
4,427,515	-				-1.0
4,427,558	+				-1.4
4,427,595	+				+0.1
4,427,664	+				+0.8
4,427,664	+				-0.3
4,427,685	+				-0.1
4,427,692	+				-1.7
4,427,693	-				-0.7
4,428,142	+		BPHYT_RS19680	0.29	-2.2
4,428,156	+		BPHYT_RS19680	0.30	-3.8
4,428,193	+		BPHYT_RS19680	0.33	-0.0
4,428,193	+		BPHYT_RS19680	0.33	-3.1
4,428,194	-		BPHYT_RS19680	0.33	-1.3
4,428,194	-		BPHYT_RS19680	0.33	-4.6
4,428,194	-		BPHYT_RS19680	0.33	-4.5
4,428,274	+		BPHYT_RS19680	0.38	-1.7
4,428,274	+		BPHYT_RS19680	0.38	-1.8
4,428,275	-		BPHYT_RS19680	0.38	-3.4
4,428,353	-		BPHYT_RS19680	0.42	-3.8
4,428,439	+		BPHYT_RS19680	0.48	+2.4
4,428,440	-		BPHYT_RS19680	0.48	-1.3