Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19670

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,424,383	-				-2.0
4,424,473	+				+2.2
4,424,501	-				-0.2
4,424,521	-				+0.8
4,424,521	-				-0.2
4,424,614	+				+0.3
4,424,638	+				-0.8
4,424,638	+				-0.7
4,424,638	+				+0.5
4,424,638	+				-0.6
4,424,638	+				-2.3
4,424,638	+				+1.0
4,424,638	+				-0.9
4,424,639	-				-1.7
4,424,657	+				-0.4
4,424,657	+				-0.7
4,424,696	+				+1.9
4,424,697	-		BPHYT_RS19665	0.10	+0.1
4,424,697	-		BPHYT_RS19665	0.10	+0.7
4,424,699	+		BPHYT_RS19665	0.10	-0.5
4,424,700	-		BPHYT_RS19665	0.11	-0.3
4,424,815	+		BPHYT_RS19665	0.32	+0.8
4,424,846	+		BPHYT_RS19665	0.38	+1.0
4,424,846	+		BPHYT_RS19665	0.38	-2.2
4,424,847	-		BPHYT_RS19665	0.38	+0.1
4,424,847	-		BPHYT_RS19665	0.38	-0.9
4,424,847	-		BPHYT_RS19665	0.38	-0.1
4,424,899	+		BPHYT_RS19665	0.47	-0.1
4,424,982	+		BPHYT_RS19665	0.63	+2.2
4,424,983	-		BPHYT_RS19665	0.63	-0.8
4,424,983	-		BPHYT_RS19665	0.63	+2.2
4,425,214	+				+0.8
4,425,215	-				+0.0
4,425,253	+				+0.3
4,425,254	-				-1.2
4,425,743	-		BPHYT_RS19670	0.27	-1.2
4,425,776	+		BPHYT_RS19670	0.29	-1.8
4,425,776	+		BPHYT_RS19670	0.29	+0.1
4,425,777	-		BPHYT_RS19670	0.29	-1.8
4,425,830	-		BPHYT_RS19670	0.33	-0.8
4,425,845	-		BPHYT_RS19670	0.34	-0.8
4,425,845	-		BPHYT_RS19670	0.34	+0.2
4,425,845	-		BPHYT_RS19670	0.34	+0.3
4,425,865	+		BPHYT_RS19670	0.35	+0.7
4,425,865	+		BPHYT_RS19670	0.35	-0.0
4,425,865	+		BPHYT_RS19670	0.35	+0.6
4,425,866	-		BPHYT_RS19670	0.35	+0.7
4,425,866	-		BPHYT_RS19670	0.35	-0.4
4,425,899	+		BPHYT_RS19670	0.37	+1.0
4,425,899	+		BPHYT_RS19670	0.37	-0.6
4,426,100	+		BPHYT_RS19670	0.50	+0.6
4,426,101	-		BPHYT_RS19670	0.50	-1.6
4,426,142	+		BPHYT_RS19670	0.53	+0.6
4,426,194	+		BPHYT_RS19670	0.56	+0.8
4,426,252	+		BPHYT_RS19670	0.60	-0.5
4,426,252	+		BPHYT_RS19670	0.60	+0.6
4,426,253	-		BPHYT_RS19670	0.60	+0.9
4,426,503	+		BPHYT_RS19670	0.76	-1.6
4,426,503	+		BPHYT_RS19670	0.76	-0.1
4,426,607	-		BPHYT_RS19670	0.82	-0.2
4,426,607	-		BPHYT_RS19670	0.82	-0.9
4,426,663	+		BPHYT_RS19670	0.86	-0.0
4,426,664	-		BPHYT_RS19670	0.86	+0.5
4,426,684	+		BPHYT_RS19670	0.87	+1.6
4,426,684	+		BPHYT_RS19670	0.87	+0.2
4,426,684	+		BPHYT_RS19670	0.87	-2.8
4,426,685	-		BPHYT_RS19670	0.87	+1.8
4,426,685	-		BPHYT_RS19670	0.87	-0.4
4,426,765	+				+0.5
4,426,765	+				-0.2
4,426,765	+				-0.2
4,426,765	+				-0.8
4,426,765	+				-0.2
4,426,765	+				+0.0
4,426,765	+				-0.2
4,426,766	-				+0.5
4,426,766	-				-0.6
4,426,766	-				+0.0
4,426,766	-				-1.4
4,426,767	+				-0.2
4,426,767	+				-1.6
4,426,767	+				-1.0
4,426,767	+				+2.4
4,426,767	+				+0.9
4,426,767	+				+0.1
4,426,767	+				-0.0
4,426,768	-				+0.5
4,426,768	-				+0.0
4,426,768	-				-0.2
4,426,768	-				+0.0
4,426,897	+				-0.2
4,426,920	+				+0.3
4,426,920	+				+0.4
4,427,090	+		BPHYT_RS19675	0.27	-0.8
4,427,090	+		BPHYT_RS19675	0.27	-0.7
4,427,090	+		BPHYT_RS19675	0.27	-0.3
4,427,504	-				+0.5
4,427,515	-				-1.0
4,427,558	+				-1.4
4,427,595	+				+0.1
4,427,664	+				+0.8
4,427,664	+				-0.3
4,427,685	+				-0.1
4,427,692	+				-1.7
4,427,693	-				-0.7