Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19660

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,423,018	-		BPHYT_RS19655	0.48	-0.6
4,423,141	+		BPHYT_RS19655	0.56	+0.3
4,423,175	-		BPHYT_RS19655	0.58	-1.0
4,423,234	+		BPHYT_RS19655	0.62	+0.8
4,423,235	-		BPHYT_RS19655	0.62	-1.2
4,423,235	-		BPHYT_RS19655	0.62	+1.4
4,423,489	+		BPHYT_RS19655	0.78	-1.1
4,423,609	+		BPHYT_RS19655	0.86	+0.5
4,423,610	-		BPHYT_RS19655	0.86	+0.5
4,423,684	+				+0.4
4,423,684	+				+1.2
4,423,684	+				-1.6
4,423,684	+				-2.3
4,423,685	-				-0.8
4,423,685	-				-2.8
4,423,685	-				+0.3
4,423,775	+				-0.0
4,423,775	+				-0.0
4,423,776	-				-0.1
4,423,915	+				+0.4
4,423,915	+				-3.6
4,423,915	+				+0.4
4,423,915	+				-1.3
4,423,916	-				+2.4
4,423,948	+				+0.0
4,423,974	+				+0.5
4,424,117	+		BPHYT_RS19660	0.27	-0.0
4,424,118	-				+0.0
4,424,383	-				-2.0
4,424,473	+				+2.2
4,424,501	-				-0.2
4,424,521	-				+0.8
4,424,521	-				-0.2
4,424,614	+				+0.3
4,424,638	+				-0.8
4,424,638	+				-0.7
4,424,638	+				+0.5
4,424,638	+				-0.6
4,424,638	+				-2.3
4,424,638	+				+1.0
4,424,638	+				-0.9
4,424,639	-				-1.7
4,424,657	+				-0.4
4,424,657	+				-0.7
4,424,696	+				+1.9
4,424,697	-		BPHYT_RS19665	0.10	+0.1
4,424,697	-		BPHYT_RS19665	0.10	+0.7
4,424,699	+		BPHYT_RS19665	0.10	-0.5
4,424,700	-		BPHYT_RS19665	0.11	-0.3
4,424,815	+		BPHYT_RS19665	0.32	+0.8
4,424,846	+		BPHYT_RS19665	0.38	+1.0
4,424,846	+		BPHYT_RS19665	0.38	-2.2
4,424,847	-		BPHYT_RS19665	0.38	+0.1
4,424,847	-		BPHYT_RS19665	0.38	-0.9
4,424,847	-		BPHYT_RS19665	0.38	-0.1
4,424,899	+		BPHYT_RS19665	0.47	-0.1
4,424,982	+		BPHYT_RS19665	0.63	+2.2
4,424,983	-		BPHYT_RS19665	0.63	-0.8
4,424,983	-		BPHYT_RS19665	0.63	+2.2
4,425,214	+				+0.8
4,425,215	-				+0.0
4,425,253	+				+0.3
4,425,254	-				-1.2