Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19645

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,420,091	-		BPHYT_RS19640	0.55	-1.9
4,420,091	-		BPHYT_RS19640	0.55	-0.2
4,420,161	+		BPHYT_RS19640	0.60	-2.6
4,420,418	+		BPHYT_RS19640	0.78	-0.2
4,420,418	+		BPHYT_RS19640	0.78	-1.8
4,420,419	-		BPHYT_RS19640	0.78	-1.7
4,420,419	-		BPHYT_RS19640	0.78	-3.1
4,420,591	-				-0.8
4,421,271	+				+0.6
4,421,271	+				+0.2
4,421,272	-				-1.7
4,421,272	-				-3.0
4,421,624	+		BPHYT_RS19650	0.46	-2.1
4,421,624	+		BPHYT_RS19650	0.46	-0.2
4,421,821	-		BPHYT_RS19650	0.71	-1.9
4,421,830	+		BPHYT_RS19650	0.72	+0.5
4,421,830	+		BPHYT_RS19650	0.72	-1.3
4,421,831	-		BPHYT_RS19650	0.73	-2.2
4,421,831	-		BPHYT_RS19650	0.73	-1.1
4,422,063	-				-2.0
4,422,111	-				+0.3
4,422,132	+				-0.2
4,422,133	-				-1.1
4,422,133	-				-0.5
4,422,192	+				-2.7
4,422,196	-				-1.8