Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19340

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,343,444	+		BPHYT_RS19335	0.37	+0.8
4,343,445	-		BPHYT_RS19335	0.37	-2.8
4,343,445	-		BPHYT_RS19335	0.37	-3.6
4,343,795	+		BPHYT_RS19335	0.68	-0.3
4,343,795	+		BPHYT_RS19335	0.68	+0.8
4,343,796	-		BPHYT_RS19335	0.68	+0.8
4,344,083	-				-2.2
4,344,167	-				-1.5
4,344,185	+				-3.0
4,344,185	+				-0.3
4,344,185	+				-0.8
4,344,185	+				+0.2
4,344,186	-				-2.3
4,344,338	+		BPHYT_RS19340	0.11	-0.6
4,344,339	-		BPHYT_RS19340	0.11	+0.0
4,344,617	+		BPHYT_RS19340	0.31	+1.1
4,344,618	-		BPHYT_RS19340	0.31	-2.0
4,344,618	-		BPHYT_RS19340	0.31	+0.2
4,344,618	-		BPHYT_RS19340	0.31	-0.2
4,344,664	+		BPHYT_RS19340	0.34	-0.7
4,344,891	+		BPHYT_RS19340	0.51	-0.2
4,345,011	-		BPHYT_RS19340	0.59	-0.7
4,345,106	+		BPHYT_RS19340	0.66	-1.0
4,345,107	-		BPHYT_RS19340	0.66	+0.4
4,345,107	-		BPHYT_RS19340	0.66	-0.8
4,345,109	+		BPHYT_RS19340	0.66	+1.4
4,345,109	+		BPHYT_RS19340	0.66	-0.5
4,345,110	-		BPHYT_RS19340	0.66	-2.0
4,345,110	-		BPHYT_RS19340	0.66	-0.2
4,345,110	-		BPHYT_RS19340	0.66	-0.5
4,345,187	+		BPHYT_RS19340	0.72	-0.8
4,345,187	+		BPHYT_RS19340	0.72	+0.4
4,345,187	+		BPHYT_RS19340	0.72	-0.8
4,345,187	+		BPHYT_RS19340	0.72	-0.7
4,345,188	-		BPHYT_RS19340	0.72	+0.8
4,345,188	-		BPHYT_RS19340	0.72	+1.9
4,345,188	-		BPHYT_RS19340	0.72	-1.6
4,345,463	+				-1.0
4,345,526	+				+0.8
4,345,526	+				+0.1
4,345,597	+				-0.2
4,345,598	-				-0.6
4,345,654	-				+0.1
4,345,707	+				-3.2
4,345,708	-				+1.6
4,345,708	-				-1.3
4,345,970	-		BPHYT_RS19345	0.10	+1.8
4,345,970	-		BPHYT_RS19345	0.10	-2.6
4,346,102	+		BPHYT_RS19345	0.18	+1.4
4,346,103	-		BPHYT_RS19345	0.18	-0.5
4,346,103	-		BPHYT_RS19345	0.18	-0.2
4,346,255	+		BPHYT_RS19345	0.27	-3.6
4,346,304	+		BPHYT_RS19345	0.30	-2.7
4,346,422	-		BPHYT_RS19345	0.36	+0.2
4,346,422	-		BPHYT_RS19345	0.36	-0.5