Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19255 and BPHYT_RS19260 are separated by 235 nucleotides BPHYT_RS19260 and BPHYT_RS19265 are separated by 594 nucleotides BPHYT_RS19265 and BPHYT_RS19270 are separated by 0 nucleotides
BPHYT_RS19255: BPHYT_RS19255 - hypothetical protein, at 4,322,946 to 4,323,224
_RS19255
BPHYT_RS19260: BPHYT_RS19260 - hypothetical protein, at 4,323,460 to 4,323,972
_RS19260
BPHYT_RS19265: BPHYT_RS19265 - hypothetical protein, at 4,324,567 to 4,324,761
_RS19265
BPHYT_RS19270: BPHYT_RS19270 - hypothetical protein, at 4,324,762 to 4,325,058
_RS19270
Position (kb) 4323
4324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4322.470 kb on + strand at 4322.471 kb on - strand at 4322.721 kb on + strand at 4322.874 kb on - strand at 4322.977 kb on + strand, within BPHYT_RS19255 at 4322.978 kb on - strand, within BPHYT_RS19255 at 4322.988 kb on + strand, within BPHYT_RS19255 at 4322.998 kb on + strand, within BPHYT_RS19255 at 4323.040 kb on + strand, within BPHYT_RS19255 at 4323.040 kb on + strand, within BPHYT_RS19255 at 4323.040 kb on + strand, within BPHYT_RS19255 at 4323.083 kb on - strand, within BPHYT_RS19255 at 4323.086 kb on + strand, within BPHYT_RS19255 at 4323.147 kb on - strand, within BPHYT_RS19255 at 4323.239 kb on + strand at 4323.239 kb on + strand at 4323.240 kb on - strand at 4323.374 kb on + strand at 4323.408 kb on + strand at 4323.409 kb on - strand at 4323.409 kb on - strand at 4323.425 kb on + strand at 4323.426 kb on - strand at 4323.905 kb on + strand at 4323.906 kb on - strand, within BPHYT_RS19260 at 4324.042 kb on + strand at 4324.043 kb on - strand at 4324.043 kb on - strand at 4324.044 kb on + strand at 4324.044 kb on + strand at 4324.044 kb on + strand at 4324.044 kb on + strand at 4324.044 kb on + strand at 4324.045 kb on - strand at 4324.045 kb on - strand at 4324.045 kb on - strand at 4324.045 kb on - strand at 4324.045 kb on - strand at 4324.045 kb on - strand at 4324.049 kb on - strand at 4324.049 kb on - strand at 4324.205 kb on + strand at 4324.318 kb on + strand at 4324.376 kb on + strand at 4324.474 kb on + strand at 4324.543 kb on - strand at 4324.575 kb on - strand at 4324.575 kb on - strand at 4324.603 kb on + strand, within BPHYT_RS19265 at 4324.791 kb on - strand at 4324.791 kb on - strand at 4324.889 kb on - strand, within BPHYT_RS19270 at 4324.889 kb on - strand, within BPHYT_RS19270 at 4324.943 kb on + strand, within BPHYT_RS19270
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 4,322,470 + +0.8 4,322,471 - +0.6 4,322,721 + +0.4 4,322,874 - +0.2 4,322,977 + BPHYT_RS19255 0.11 +0.9 4,322,978 - BPHYT_RS19255 0.11 +2.4 4,322,988 + BPHYT_RS19255 0.15 -0.4 4,322,998 + BPHYT_RS19255 0.19 -0.2 4,323,040 + BPHYT_RS19255 0.34 +0.2 4,323,040 + BPHYT_RS19255 0.34 +0.9 4,323,040 + BPHYT_RS19255 0.34 +0.1 4,323,083 - BPHYT_RS19255 0.49 +0.8 4,323,086 + BPHYT_RS19255 0.50 -0.0 4,323,147 - BPHYT_RS19255 0.72 -0.2 4,323,239 + -0.5 4,323,239 + -0.4 4,323,240 - +0.0 4,323,374 + -0.5 4,323,408 + -0.8 4,323,409 - -1.7 4,323,409 - +0.0 4,323,425 + -1.2 4,323,426 - +0.2 4,323,905 + -1.8 4,323,906 - BPHYT_RS19260 0.87 -2.5 4,324,042 + -0.3 4,324,043 - +0.8 4,324,043 - -0.2 4,324,044 + -0.2 4,324,044 + -1.8 4,324,044 + +1.3 4,324,044 + +0.2 4,324,044 + -0.4 4,324,045 - -1.0 4,324,045 - +1.5 4,324,045 - +0.9 4,324,045 - +0.6 4,324,045 - +1.5 4,324,045 - -1.1 4,324,049 - -2.8 4,324,049 - -0.7 4,324,205 + -0.6 4,324,318 + -0.6 4,324,376 + -1.5 4,324,474 + -0.8 4,324,543 - +0.9 4,324,575 - -1.0 4,324,575 - +2.2 4,324,603 + BPHYT_RS19265 0.18 -0.0 4,324,791 - -0.3 4,324,791 - -0.2 4,324,889 - BPHYT_RS19270 0.43 +0.8 4,324,889 - BPHYT_RS19270 0.43 +0.4 4,324,943 + BPHYT_RS19270 0.61 +0.6
Or see this region's nucleotide sequence