Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19230

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,318,333	+		BPHYT_RS19225	0.76	+0.5
4,318,334	-		BPHYT_RS19225	0.76	-0.2
4,318,334	-		BPHYT_RS19225	0.76	+0.0
4,318,455	-				-0.0
4,318,455	-				-0.8
4,318,455	-				-0.0
4,318,455	-				-1.5
4,318,490	-				-0.6
4,318,536	-				+0.4
4,318,577	+				-0.2
4,318,577	+				-0.2
4,318,591	+				-1.1
4,318,591	+				+0.5
4,318,686	+				-0.1
4,318,689	+				-0.4
4,318,758	-				-1.9
4,318,904	+				-1.3
4,318,904	+				-0.3
4,318,904	+				-0.2
4,318,905	-				-0.8
4,318,979	+				-0.5
4,318,979	+				+0.8
4,318,980	-				+0.2
4,319,060	+				+0.3
4,319,076	+				+0.4
4,319,083	+				-0.2
4,319,083	+				-0.7
4,319,139	-				+1.1
4,319,142	+				-0.6
4,319,143	-				+0.5
4,319,143	-				+0.9
4,319,143	-				+0.2
4,319,268	+		BPHYT_RS19230	0.13	+2.4
4,319,284	+		BPHYT_RS19230	0.17	-1.5
4,319,285	-		BPHYT_RS19230	0.17	-0.8
4,319,285	-		BPHYT_RS19230	0.17	-1.6
4,319,285	-		BPHYT_RS19230	0.17	+0.3
4,319,289	+		BPHYT_RS19230	0.18	+1.9
4,319,289	+		BPHYT_RS19230	0.18	-0.0
4,319,290	-		BPHYT_RS19230	0.18	-1.6
4,319,290	-		BPHYT_RS19230	0.18	-0.2
4,319,331	-		BPHYT_RS19230	0.28	+0.8
4,319,363	+		BPHYT_RS19230	0.36	-1.1
4,319,366	-		BPHYT_RS19230	0.37	-0.9
4,319,509	-		BPHYT_RS19230	0.72	+0.1
4,319,656	+				-0.5
4,319,656	+				+0.4
4,319,657	-				-0.7
4,319,713	+				+0.5
4,319,717	+				-0.4
4,319,717	+				-0.8
4,319,718	-				-0.5
4,319,747	-				-0.2
4,319,747	-				-0.2
4,319,757	-				+0.4
4,319,769	-				-2.7
4,319,842	-				+1.8
4,319,842	-				-0.2
4,320,025	+		BPHYT_RS19235	0.65	-1.2
4,320,026	-		BPHYT_RS19235	0.66	+0.8
4,320,049	+		BPHYT_RS19235	0.74	+2.6
4,320,050	-		BPHYT_RS19235	0.74	-0.0
4,320,053	-		BPHYT_RS19235	0.75	+0.2
4,320,097	-				-0.3
4,320,434	+				+0.4
4,320,434	+				-0.0
4,320,532	+		BPHYT_RS19240	0.18	-0.5
4,320,596	-		BPHYT_RS19240	0.31	+1.8
4,320,596	-		BPHYT_RS19240	0.31	-0.0
4,320,614	+		BPHYT_RS19240	0.34	+0.7
4,320,614	+		BPHYT_RS19240	0.34	-1.2
4,320,614	+		BPHYT_RS19240	0.34	+0.3
4,320,615	-		BPHYT_RS19240	0.34	-1.2
4,320,615	-		BPHYT_RS19240	0.34	-1.0
4,320,615	-		BPHYT_RS19240	0.34	+0.8