Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19045 and BPHYT_RS19050 are separated by 286 nucleotides BPHYT_RS19050 and BPHYT_RS19055 are separated by 163 nucleotides BPHYT_RS19055 and BPHYT_RS19060 are separated by 131 nucleotides
BPHYT_RS19045: BPHYT_RS19045 - hypothetical protein, at 4,275,382 to 4,276,077
_RS19045
BPHYT_RS19050: BPHYT_RS19050 - hypothetical protein, at 4,276,364 to 4,276,675
_RS19050
BPHYT_RS19055: BPHYT_RS19055 - COF family hydrolase, at 4,276,839 to 4,277,660
_RS19055
BPHYT_RS19060: BPHYT_RS19060 - ATPase, at 4,277,792 to 4,278,673
_RS19060
Position (kb) 4276
4277
4278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.840 kb on - strand, within BPHYT_RS19045 at 4275.915 kb on + strand, within BPHYT_RS19045 at 4275.916 kb on - strand, within BPHYT_RS19045 at 4275.916 kb on - strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.919 kb on + strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4275.920 kb on - strand, within BPHYT_RS19045 at 4276.083 kb on + strand at 4276.086 kb on + strand at 4276.086 kb on + strand at 4276.086 kb on + strand at 4276.087 kb on - strand at 4276.094 kb on + strand at 4276.106 kb on - strand at 4276.228 kb on + strand at 4276.229 kb on - strand at 4276.229 kb on - strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.232 kb on + strand at 4276.233 kb on - strand at 4276.233 kb on - strand at 4276.233 kb on - strand at 4276.233 kb on - strand at 4276.279 kb on + strand at 4276.279 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.339 kb on + strand at 4276.340 kb on - strand at 4276.340 kb on - strand at 4276.340 kb on - strand at 4276.340 kb on - strand at 4276.364 kb on - strand at 4276.438 kb on + strand, within BPHYT_RS19050 at 4276.478 kb on + strand, within BPHYT_RS19050 at 4276.479 kb on - strand, within BPHYT_RS19050 at 4276.479 kb on - strand, within BPHYT_RS19050 at 4276.520 kb on + strand, within BPHYT_RS19050 at 4276.521 kb on - strand, within BPHYT_RS19050 at 4276.524 kb on - strand, within BPHYT_RS19050 at 4276.565 kb on + strand, within BPHYT_RS19050 at 4276.586 kb on + strand, within BPHYT_RS19050 at 4276.630 kb on + strand, within BPHYT_RS19050 at 4276.692 kb on - strand at 4277.091 kb on + strand, within BPHYT_RS19055 at 4277.091 kb on + strand, within BPHYT_RS19055 at 4277.091 kb on + strand, within BPHYT_RS19055 at 4277.131 kb on + strand, within BPHYT_RS19055 at 4277.131 kb on + strand, within BPHYT_RS19055 at 4277.132 kb on - strand, within BPHYT_RS19055 at 4277.132 kb on - strand, within BPHYT_RS19055 at 4277.136 kb on + strand, within BPHYT_RS19055 at 4277.136 kb on + strand, within BPHYT_RS19055 at 4277.136 kb on + strand, within BPHYT_RS19055 at 4277.137 kb on - strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.140 kb on + strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.141 kb on - strand, within BPHYT_RS19055 at 4277.143 kb on - strand, within BPHYT_RS19055 at 4277.143 kb on - strand, within BPHYT_RS19055 at 4277.210 kb on - strand, within BPHYT_RS19055 at 4277.210 kb on - strand, within BPHYT_RS19055 at 4277.263 kb on + strand, within BPHYT_RS19055 at 4277.264 kb on - strand, within BPHYT_RS19055 at 4277.264 kb on - strand, within BPHYT_RS19055 at 4277.385 kb on + strand, within BPHYT_RS19055 at 4277.385 kb on + strand, within BPHYT_RS19055 at 4277.386 kb on - strand, within BPHYT_RS19055 at 4277.386 kb on - strand, within BPHYT_RS19055 at 4277.472 kb on - strand, within BPHYT_RS19055 at 4277.472 kb on - strand, within BPHYT_RS19055 at 4277.479 kb on + strand, within BPHYT_RS19055 at 4277.525 kb on - strand, within BPHYT_RS19055 at 4277.656 kb on + strand at 4277.656 kb on + strand at 4277.656 kb on + strand at 4277.657 kb on - strand at 4277.657 kb on - strand at 4277.657 kb on - strand at 4277.660 kb on + strand at 4277.660 kb on + strand at 4277.660 kb on + strand at 4277.661 kb on - strand at 4277.661 kb on - strand at 4277.689 kb on + strand at 4277.689 kb on + strand at 4277.690 kb on - strand at 4277.693 kb on + strand at 4277.693 kb on + strand at 4277.693 kb on + strand at 4277.693 kb on + strand at 4277.694 kb on - strand at 4277.881 kb on - strand, within BPHYT_RS19060 at 4277.895 kb on + strand, within BPHYT_RS19060 at 4278.025 kb on + strand, within BPHYT_RS19060 at 4278.025 kb on + strand, within BPHYT_RS19060 at 4278.025 kb on + strand, within BPHYT_RS19060 at 4278.026 kb on - strand, within BPHYT_RS19060 at 4278.060 kb on + strand, within BPHYT_RS19060 at 4278.061 kb on - strand, within BPHYT_RS19060 at 4278.360 kb on + strand, within BPHYT_RS19060 at 4278.360 kb on + strand, within BPHYT_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 4,275,840 - BPHYT_RS19045 0.66 -0.6 4,275,840 - BPHYT_RS19045 0.66 -0.7 4,275,840 - BPHYT_RS19045 0.66 +1.4 4,275,840 - BPHYT_RS19045 0.66 -2.7 4,275,915 + BPHYT_RS19045 0.77 +0.4 4,275,916 - BPHYT_RS19045 0.77 -0.3 4,275,916 - BPHYT_RS19045 0.77 -0.4 4,275,919 + BPHYT_RS19045 0.77 +0.2 4,275,919 + BPHYT_RS19045 0.77 +1.4 4,275,919 + BPHYT_RS19045 0.77 -1.7 4,275,919 + BPHYT_RS19045 0.77 -1.4 4,275,919 + BPHYT_RS19045 0.77 -0.8 4,275,919 + BPHYT_RS19045 0.77 +0.1 4,275,919 + BPHYT_RS19045 0.77 -0.6 4,275,920 - BPHYT_RS19045 0.77 -0.3 4,275,920 - BPHYT_RS19045 0.77 -0.1 4,275,920 - BPHYT_RS19045 0.77 -0.9 4,275,920 - BPHYT_RS19045 0.77 -1.5 4,275,920 - BPHYT_RS19045 0.77 -3.0 4,276,083 + +0.7 4,276,086 + -1.5 4,276,086 + +1.1 4,276,086 + -1.2 4,276,087 - -0.8 4,276,094 + -0.3 4,276,106 - -1.6 4,276,228 + +0.8 4,276,229 - -1.0 4,276,229 - -0.4 4,276,232 + -1.1 4,276,232 + -1.5 4,276,232 + -1.8 4,276,232 + -2.0 4,276,232 + +0.2 4,276,233 - -0.6 4,276,233 - +0.0 4,276,233 - -1.6 4,276,233 - -0.2 4,276,279 + -0.1 4,276,279 + -1.1 4,276,339 + -0.9 4,276,339 + +0.5 4,276,339 + +0.0 4,276,339 + +1.2 4,276,339 + +0.5 4,276,339 + -0.6 4,276,340 - +0.1 4,276,340 - +0.1 4,276,340 - +1.4 4,276,340 - +1.0 4,276,364 - +1.8 4,276,438 + BPHYT_RS19050 0.24 -0.8 4,276,478 + BPHYT_RS19050 0.37 -0.5 4,276,479 - BPHYT_RS19050 0.37 -0.1 4,276,479 - BPHYT_RS19050 0.37 +0.7 4,276,520 + BPHYT_RS19050 0.50 -0.2 4,276,521 - BPHYT_RS19050 0.50 -1.5 4,276,524 - BPHYT_RS19050 0.51 -2.4 4,276,565 + BPHYT_RS19050 0.64 +0.4 4,276,586 + BPHYT_RS19050 0.71 +0.6 4,276,630 + BPHYT_RS19050 0.85 +1.1 4,276,692 - +0.0 4,277,091 + BPHYT_RS19055 0.31 -1.6 4,277,091 + BPHYT_RS19055 0.31 -2.3 4,277,091 + BPHYT_RS19055 0.31 -0.7 4,277,131 + BPHYT_RS19055 0.36 -0.3 4,277,131 + BPHYT_RS19055 0.36 +0.8 4,277,132 - BPHYT_RS19055 0.36 -1.6 4,277,132 - BPHYT_RS19055 0.36 -0.8 4,277,136 + BPHYT_RS19055 0.36 +0.7 4,277,136 + BPHYT_RS19055 0.36 +0.7 4,277,136 + BPHYT_RS19055 0.36 -1.1 4,277,137 - BPHYT_RS19055 0.36 +0.7 4,277,140 + BPHYT_RS19055 0.37 -0.6 4,277,140 + BPHYT_RS19055 0.37 -2.1 4,277,140 + BPHYT_RS19055 0.37 +0.0 4,277,140 + BPHYT_RS19055 0.37 +0.2 4,277,141 - BPHYT_RS19055 0.37 +0.4 4,277,141 - BPHYT_RS19055 0.37 +2.6 4,277,141 - BPHYT_RS19055 0.37 -0.9 4,277,141 - BPHYT_RS19055 0.37 +1.2 4,277,143 - BPHYT_RS19055 0.37 -0.8 4,277,143 - BPHYT_RS19055 0.37 +0.3 4,277,210 - BPHYT_RS19055 0.45 +0.6 4,277,210 - BPHYT_RS19055 0.45 -0.7 4,277,263 + BPHYT_RS19055 0.52 -0.2 4,277,264 - BPHYT_RS19055 0.52 -0.6 4,277,264 - BPHYT_RS19055 0.52 -0.2 4,277,385 + BPHYT_RS19055 0.66 +0.8 4,277,385 + BPHYT_RS19055 0.66 -0.1 4,277,386 - BPHYT_RS19055 0.67 +0.8 4,277,386 - BPHYT_RS19055 0.67 -1.6 4,277,472 - BPHYT_RS19055 0.77 -0.0 4,277,472 - BPHYT_RS19055 0.77 -1.6 4,277,479 + BPHYT_RS19055 0.78 -0.0 4,277,525 - BPHYT_RS19055 0.83 -0.4 4,277,656 + -1.0 4,277,656 + -1.0 4,277,656 + +1.1 4,277,657 - +1.0 4,277,657 - +0.6 4,277,657 - -0.2 4,277,660 + -0.5 4,277,660 + -2.1 4,277,660 + +0.3 4,277,661 - -0.8 4,277,661 - +0.3 4,277,689 + -0.2 4,277,689 + -0.4 4,277,690 - -0.5 4,277,693 + +0.0 4,277,693 + -0.8 4,277,693 + -0.6 4,277,693 + +0.2 4,277,694 - +0.9 4,277,881 - BPHYT_RS19060 0.10 -0.2 4,277,895 + BPHYT_RS19060 0.12 -1.5 4,278,025 + BPHYT_RS19060 0.26 -0.3 4,278,025 + BPHYT_RS19060 0.26 -0.8 4,278,025 + BPHYT_RS19060 0.26 +0.3 4,278,026 - BPHYT_RS19060 0.27 -0.9 4,278,060 + BPHYT_RS19060 0.30 -0.8 4,278,061 - BPHYT_RS19060 0.30 +0.1 4,278,360 + BPHYT_RS19060 0.64 -0.9 4,278,360 + BPHYT_RS19060 0.64 -2.9
Or see this region's nucleotide sequence