Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18735

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,211,744	+		BPHYT_RS18730	0.68	+1.1
4,211,744	+		BPHYT_RS18730	0.68	+0.4
4,211,744	+		BPHYT_RS18730	0.68	-0.4
4,211,745	-		BPHYT_RS18730	0.68	+1.1
4,211,745	-		BPHYT_RS18730	0.68	-0.1
4,211,745	-		BPHYT_RS18730	0.68	+0.8
4,211,745	-		BPHYT_RS18730	0.68	+1.4
4,211,745	-		BPHYT_RS18730	0.68	+0.7
4,212,343	-				+0.4
4,212,343	-				+2.0
4,212,370	+				+0.4
4,212,371	-				+0.5
4,212,371	-				+1.3
4,212,371	-				+1.7
4,212,725	+		BPHYT_RS18735	0.15	-2.1
4,212,725	+		BPHYT_RS18735	0.15	+0.7
4,212,726	-		BPHYT_RS18735	0.15	-0.3
4,212,726	-		BPHYT_RS18735	0.15	-0.5
4,212,726	-		BPHYT_RS18735	0.15	+1.1
4,212,739	+		BPHYT_RS18735	0.16	+0.2
4,212,739	+		BPHYT_RS18735	0.16	-0.8
4,212,739	+		BPHYT_RS18735	0.16	+1.6
4,212,739	+		BPHYT_RS18735	0.16	+0.4
4,212,739	+		BPHYT_RS18735	0.16	+0.9
4,212,740	-		BPHYT_RS18735	0.16	-0.5
4,212,740	-		BPHYT_RS18735	0.16	+0.9
4,212,805	+		BPHYT_RS18735	0.20	+0.1
4,212,805	+		BPHYT_RS18735	0.20	-0.1
4,212,805	+		BPHYT_RS18735	0.20	+0.9
4,212,805	+		BPHYT_RS18735	0.20	-0.7
4,212,806	-		BPHYT_RS18735	0.20	+0.4
4,212,806	-		BPHYT_RS18735	0.20	+0.6
4,213,006	+		BPHYT_RS18735	0.32	-0.3
4,213,025	+		BPHYT_RS18735	0.33	+1.1
4,213,025	+		BPHYT_RS18735	0.33	+0.3
4,213,026	-		BPHYT_RS18735	0.33	+0.7
4,213,026	-		BPHYT_RS18735	0.33	-0.1
4,213,502	+		BPHYT_RS18735	0.62	+2.4
4,213,528	+		BPHYT_RS18735	0.63	-0.1
4,213,528	+		BPHYT_RS18735	0.63	+1.1
4,213,529	-		BPHYT_RS18735	0.63	+1.1
4,213,532	+				+0.9
4,213,532	+		BPHYT_RS18735	0.63	+0.5
4,213,532	+		BPHYT_RS18735	0.63	+3.9
4,213,532	+		BPHYT_RS18735	0.63	+1.2
4,213,533	-		BPHYT_RS18735	0.63	+1.9
4,213,535	-		BPHYT_RS18735	0.64	-0.2
4,213,535	-		BPHYT_RS18735	0.64	+1.0
4,213,634	-		BPHYT_RS18735	0.70	-0.0
4,213,644	+		BPHYT_RS18735	0.70	+2.0
4,213,645	-		BPHYT_RS18735	0.70	-0.1
4,213,685	-		BPHYT_RS18735	0.73	-0.4
4,213,758	-		BPHYT_RS18735	0.77	-0.1
4,213,768	+		BPHYT_RS18735	0.78	+2.5
4,213,768	+		BPHYT_RS18735	0.78	-2.0
4,213,768	+		BPHYT_RS18735	0.78	+2.1
4,213,769	-		BPHYT_RS18735	0.78	-0.1
4,213,769	-		BPHYT_RS18735	0.78	+1.3
4,213,945	+		BPHYT_RS18735	0.88	+1.0
4,213,952	-		BPHYT_RS18735	0.89	-0.0
4,213,952	-		BPHYT_RS18735	0.89	-0.9
4,214,125	+				+0.6
4,214,125	+				+1.2
4,214,125	+				+0.7
4,214,125	+				+3.6
4,214,125	+				+1.9
4,214,125	+				+0.6
4,214,126	-				+0.9
4,214,126	-				-1.4
4,214,126	-				-0.7
4,214,126	-				-1.7
4,214,131	+				-1.6
4,214,196	-				+0.8
4,214,217	+				+2.4
4,214,218	-				+1.3
4,214,510	+				-1.1
4,214,511	-				-0.8
4,214,675	-		BPHYT_RS18740	0.14	+0.6
4,214,908	-		BPHYT_RS18740	0.27	+0.3
4,214,933	+		BPHYT_RS18740	0.29	+2.1