Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18710

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS18700 and BPHYT_RS18705 are separated by 7 nucleotidesBPHYT_RS18705 and BPHYT_RS18710 are separated by 11 nucleotidesBPHYT_RS18710 and BPHYT_RS18715 are separated by 129 nucleotides BPHYT_RS18700: BPHYT_RS18700 - hypothetical protein, at 4,205,276 to 4,205,533 _RS18700 BPHYT_RS18705: BPHYT_RS18705 - 5,10-methylenetetrahydrofolate reductase, at 4,205,541 to 4,206,371 _RS18705 BPHYT_RS18710: BPHYT_RS18710 - membrane protein, at 4,206,383 to 4,206,736 _RS18710 BPHYT_RS18715: BPHYT_RS18715 - adenosylhomocysteinase, at 4,206,866 to 4,208,287 _RS18715 Position (kb) 4206 4207Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4205.439 kb on - strand, within BPHYT_RS18700at 4205.597 kb on - strandat 4205.597 kb on - strandat 4205.870 kb on - strand, within BPHYT_RS18705at 4205.957 kb on - strand, within BPHYT_RS18705at 4206.011 kb on + strand, within BPHYT_RS18705at 4206.409 kb on + strandat 4206.410 kb on - strandat 4206.442 kb on - strand, within BPHYT_RS18710at 4206.681 kb on + strand, within BPHYT_RS18710at 4206.682 kb on - strand, within BPHYT_RS18710at 4206.682 kb on - strand, within BPHYT_RS18710at 4206.738 kb on + strandat 4206.738 kb on + strandat 4206.739 kb on - strandat 4206.739 kb on - strandat 4206.739 kb on - strandat 4206.739 kb on - strandat 4206.739 kb on - strandat 4206.739 kb on - strandat 4206.739 kb on - strandat 4206.781 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
remove
4,205,439 - BPHYT_RS18700 0.63 +1.1
4,205,597 - -0.1
4,205,597 - -0.7
4,205,870 - BPHYT_RS18705 0.40 +0.9
4,205,957 - BPHYT_RS18705 0.50 -1.0
4,206,011 + BPHYT_RS18705 0.57 -0.1
4,206,409 + -2.0
4,206,410 - +0.4
4,206,442 - BPHYT_RS18710 0.17 +1.4
4,206,681 + BPHYT_RS18710 0.84 -2.1
4,206,682 - BPHYT_RS18710 0.84 +3.3
4,206,682 - BPHYT_RS18710 0.84 +2.8
4,206,738 + -1.1
4,206,738 + -2.3
4,206,739 - +0.9
4,206,739 - +0.0
4,206,739 - -2.3
4,206,739 - -0.3
4,206,739 - +1.3
4,206,739 - -2.0
4,206,739 - -1.1
4,206,781 - -0.5

Or see this region's nucleotide sequence