Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18710
Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 |
---|---|---|---|---|---|
remove | |||||
4,205,439 | - | BPHYT_RS18700 | 0.63 | +1.1 | |
4,205,597 | - | -0.1 | |||
4,205,597 | - | -0.7 | |||
4,205,870 | - | BPHYT_RS18705 | 0.40 | +0.9 | |
4,205,957 | - | BPHYT_RS18705 | 0.50 | -1.0 | |
4,206,011 | + | BPHYT_RS18705 | 0.57 | -0.1 | |
4,206,409 | + | -2.0 | |||
4,206,410 | - | +0.4 | |||
4,206,442 | - | BPHYT_RS18710 | 0.17 | +1.4 | |
4,206,681 | + | BPHYT_RS18710 | 0.84 | -2.1 | |
4,206,682 | - | BPHYT_RS18710 | 0.84 | +3.3 | |
4,206,682 | - | BPHYT_RS18710 | 0.84 | +2.8 | |
4,206,738 | + | -1.1 | |||
4,206,738 | + | -2.3 | |||
4,206,739 | - | +0.9 | |||
4,206,739 | - | +0.0 | |||
4,206,739 | - | -2.3 | |||
4,206,739 | - | -0.3 | |||
4,206,739 | - | +1.3 | |||
4,206,739 | - | -2.0 | |||
4,206,739 | - | -1.1 | |||
4,206,781 | - | -0.5 |
Or see this region's nucleotide sequence