Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18645

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,191,774	-				-0.6
4,191,774	-				-0.7
4,191,774	-				-0.6
4,191,774	-				+0.7
4,191,785	+				-0.1
4,191,925	-				+1.6
4,191,925	-				-0.8
4,191,925	-				-0.9
4,191,969	+				+0.7
4,191,969	+				-0.1
4,192,088	-		BPHYT_RS18640	0.24	+0.2
4,192,214	+		BPHYT_RS18640	0.41	-2.7
4,192,215	-		BPHYT_RS18640	0.41	-0.6
4,192,215	-		BPHYT_RS18640	0.41	-1.4
4,192,215	-				-1.7
4,192,669	+				+0.7
4,192,670	-				+0.7
4,192,670	-				+0.2
4,192,775	-		BPHYT_RS18645	0.13	+1.2
4,192,829	+		BPHYT_RS18645	0.19	+0.9
4,192,830	-		BPHYT_RS18645	0.19	+0.1
4,193,255	-		BPHYT_RS18645	0.63	+0.3
4,193,255	-		BPHYT_RS18645	0.63	-0.3
4,193,294	-		BPHYT_RS18645	0.67	-1.7
4,193,444	-		BPHYT_RS18645	0.83	-0.2
4,193,574	+				-0.3
4,193,604	-				+0.3
4,193,605	+				+2.0
4,193,663	-				-0.6
4,193,709	-				-0.3
4,193,709	-				-0.5
4,193,746	+				-1.1
4,193,747	-				+0.9
4,193,747	-				-0.1
4,193,875	+				+2.0
4,193,875	+				-0.5
4,193,876	-				+0.9
4,193,979	+				-4.1
4,194,152	-		BPHYT_RS18650	0.18	+0.7
4,194,253	+		BPHYT_RS18650	0.24	-0.1