Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18630

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,188,921	-				+0.2
4,188,990	-				+0.6
4,188,995	-				+0.5
4,189,076	+				-1.2
4,189,093	+				+0.4
4,189,093	+				-0.7
4,189,094	-				-0.9
4,189,094	-				-0.2
4,189,122	+				-0.4
4,189,123	-				-0.2
4,189,454	+		BPHYT_RS18625	0.57	+0.1
4,189,455	-		BPHYT_RS18625	0.57	+0.1
4,189,455	-		BPHYT_RS18625	0.57	-2.2
4,189,493	+		BPHYT_RS18625	0.63	-0.5
4,189,493	+		BPHYT_RS18625	0.63	-0.1
4,189,494	-		BPHYT_RS18625	0.63	-0.9
4,189,523	-		BPHYT_RS18625	0.67	+0.3
4,189,523	-		BPHYT_RS18625	0.67	-1.7
4,189,726	-				-1.5
4,190,066	-		BPHYT_RS18630	0.32	-1.6
4,190,475	+		BPHYT_RS18630	0.71	+0.0
4,190,703	+				-0.1
4,190,704	-				-0.1
4,190,704	-				-0.8
4,190,707	+				-0.1
4,190,708	-				-1.9
4,190,708	-				-1.7
4,190,782	+				-0.2
4,190,783	-				-0.1
4,191,122	+		BPHYT_RS18635	0.31	-1.1
4,191,137	+		BPHYT_RS18635	0.33	+0.2
4,191,138	-		BPHYT_RS18635	0.33	-3.2
4,191,774	-				-0.6
4,191,774	-				-0.7
4,191,774	-				-0.6
4,191,774	-				+0.7