Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18525

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,165,725	+				+0.7
4,165,726	-				+0.9
4,165,984	-				-1.3
4,166,050	-				-1.2
4,166,053	+				+0.3
4,166,053	+				-0.5
4,166,053	+				-1.3
4,166,053	+				-0.8
4,166,054	-				-1.1
4,166,054	-				-1.4
4,166,115	+		BPHYT_RS18520	0.16	+1.3
4,166,290	+		BPHYT_RS18520	0.47	-0.1
4,166,300	+		BPHYT_RS18520	0.48	+0.8
4,166,492	+		BPHYT_RS18520	0.82	+1.6
4,166,492	+		BPHYT_RS18520	0.82	+1.2
4,166,492	+		BPHYT_RS18520	0.82	+0.0
4,166,493	-		BPHYT_RS18520	0.82	+0.5
4,166,493	-		BPHYT_RS18520	0.82	-2.0
4,166,493	-		BPHYT_RS18520	0.82	+0.2
4,166,493	-		BPHYT_RS18520	0.82	-0.0
4,166,493	-		BPHYT_RS18520	0.82	+0.5
4,166,495	+		BPHYT_RS18520	0.82	+0.7
4,166,496	-		BPHYT_RS18520	0.82	-2.5
4,166,509	+		BPHYT_RS18520	0.85	+0.5
4,166,509	+		BPHYT_RS18520	0.85	+1.8
4,166,553	+				+1.3
4,166,553	+				+0.4
4,166,553	+				-0.8
4,166,565	+				-1.1
4,166,586	-				-0.1
4,166,668	+				+0.4
4,166,669	-				+4.5
4,166,669	-				+1.0
4,166,715	+				+0.6
4,166,715	+				-1.0
4,166,715	+				-0.5
4,166,911	-		BPHYT_RS18525	0.51	+0.3
4,166,911	-		BPHYT_RS18525	0.51	+0.9
4,166,911	-		BPHYT_RS18525	0.51	+0.9
4,166,911	-		BPHYT_RS18525	0.51	-0.1
4,167,033	+		BPHYT_RS18525	0.82	+2.9
4,167,061	+		BPHYT_RS18525	0.89	+3.2
4,167,263	+				+0.5
4,167,263	+				+1.4
4,167,310	-				-2.3
4,167,374	+				+1.3
4,167,393	-				-0.7
4,167,418	+				+0.9
4,167,418	+				-0.1
4,167,418	+				+1.5
4,167,435	+				-1.0
4,167,436	-				+0.9
4,167,457	+				+1.0
4,167,457	+				+2.7
4,167,457	+				+0.4
4,167,460	+				+0.9
4,167,460	+				-0.4
4,167,507	+				+2.1
4,167,520	+				+0.4
4,167,520	+				-0.1