Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18505 and BPHYT_RS18510 are separated by 82 nucleotides BPHYT_RS18510 and BPHYT_RS18515 are separated by 0 nucleotides
BPHYT_RS18505: BPHYT_RS18505 - amino acid dehydrogenase, at 4,162,923 to 4,164,149
_RS18505
BPHYT_RS18510: BPHYT_RS18510 - endoribonuclease L-PSP, at 4,164,232 to 4,164,585
_RS18510
BPHYT_RS18515: BPHYT_RS18515 - hypothetical protein, at 4,164,586 to 4,164,789
_RS18515
Position (kb) 4164
4165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4163.670 kb on + strand, within BPHYT_RS18505 at 4163.671 kb on - strand, within BPHYT_RS18505 at 4163.736 kb on + strand, within BPHYT_RS18505 at 4163.736 kb on + strand, within BPHYT_RS18505 at 4163.736 kb on + strand, within BPHYT_RS18505 at 4163.736 kb on + strand, within BPHYT_RS18505 at 4163.737 kb on - strand, within BPHYT_RS18505 at 4163.751 kb on + strand, within BPHYT_RS18505 at 4163.785 kb on + strand, within BPHYT_RS18505 at 4163.785 kb on + strand, within BPHYT_RS18505 at 4163.786 kb on - strand, within BPHYT_RS18505 at 4163.830 kb on - strand, within BPHYT_RS18505 at 4163.939 kb on + strand, within BPHYT_RS18505 at 4163.940 kb on - strand, within BPHYT_RS18505 at 4163.940 kb on - strand, within BPHYT_RS18505 at 4163.940 kb on - strand, within BPHYT_RS18505 at 4163.940 kb on - strand, within BPHYT_RS18505 at 4164.057 kb on - strand at 4164.156 kb on + strand at 4164.190 kb on - strand at 4164.190 kb on - strand at 4164.204 kb on + strand at 4164.204 kb on + strand at 4164.205 kb on - strand at 4164.205 kb on - strand at 4164.298 kb on - strand, within BPHYT_RS18510 at 4164.304 kb on + strand, within BPHYT_RS18510 at 4164.304 kb on + strand, within BPHYT_RS18510 at 4164.305 kb on - strand, within BPHYT_RS18510 at 4164.305 kb on - strand, within BPHYT_RS18510 at 4164.305 kb on - strand, within BPHYT_RS18510 at 4164.320 kb on + strand, within BPHYT_RS18510 at 4164.445 kb on - strand, within BPHYT_RS18510 at 4164.583 kb on + strand at 4164.583 kb on + strand at 4164.583 kb on + strand at 4164.603 kb on + strand at 4164.603 kb on + strand at 4164.603 kb on + strand at 4164.604 kb on - strand at 4164.608 kb on + strand, within BPHYT_RS18515 at 4164.609 kb on - strand, within BPHYT_RS18515 at 4164.890 kb on + strand at 4164.891 kb on - strand at 4164.891 kb on - strand at 4164.891 kb on - strand at 4164.902 kb on + strand at 4164.976 kb on + strand at 4165.016 kb on - strand at 4165.016 kb on - strand at 4165.016 kb on - strand at 4165.181 kb on + strand at 4165.181 kb on + strand at 4165.181 kb on + strand at 4165.181 kb on + strand at 4165.181 kb on + strand at 4165.181 kb on + strand at 4165.181 kb on + strand at 4165.182 kb on - strand at 4165.182 kb on - strand at 4165.185 kb on + strand at 4165.185 kb on + strand at 4165.185 kb on + strand at 4165.185 kb on + strand at 4165.185 kb on + strand at 4165.186 kb on - strand at 4165.186 kb on - strand at 4165.186 kb on - strand at 4165.392 kb on + strand at 4165.549 kb on + strand at 4165.550 kb on - strand at 4165.607 kb on + strand at 4165.607 kb on + strand at 4165.608 kb on - strand at 4165.608 kb on - strand at 4165.647 kb on + strand at 4165.698 kb on - strand at 4165.698 kb on - strand at 4165.698 kb on - strand at 4165.706 kb on - strand at 4165.706 kb on - strand at 4165.706 kb on - strand at 4165.725 kb on + strand at 4165.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 4,163,670 + BPHYT_RS18505 0.61 -4.2 4,163,671 - BPHYT_RS18505 0.61 -1.1 4,163,736 + BPHYT_RS18505 0.66 -2.3 4,163,736 + BPHYT_RS18505 0.66 -3.5 4,163,736 + BPHYT_RS18505 0.66 -2.9 4,163,736 + BPHYT_RS18505 0.66 -2.1 4,163,737 - BPHYT_RS18505 0.66 -1.5 4,163,751 + BPHYT_RS18505 0.67 -0.7 4,163,785 + BPHYT_RS18505 0.70 -0.7 4,163,785 + BPHYT_RS18505 0.70 +0.3 4,163,786 - BPHYT_RS18505 0.70 -2.0 4,163,830 - BPHYT_RS18505 0.74 -2.1 4,163,939 + BPHYT_RS18505 0.83 -2.1 4,163,940 - BPHYT_RS18505 0.83 -3.0 4,163,940 - BPHYT_RS18505 0.83 -3.8 4,163,940 - BPHYT_RS18505 0.83 -3.5 4,163,940 - BPHYT_RS18505 0.83 -3.0 4,164,057 - -3.3 4,164,156 + -1.7 4,164,190 - -1.1 4,164,190 - +2.7 4,164,204 + -2.5 4,164,204 + -1.5 4,164,205 - +2.0 4,164,205 - -2.8 4,164,298 - BPHYT_RS18510 0.19 +0.1 4,164,304 + BPHYT_RS18510 0.20 -0.5 4,164,304 + BPHYT_RS18510 0.20 -0.5 4,164,305 - BPHYT_RS18510 0.21 -1.0 4,164,305 - BPHYT_RS18510 0.21 +1.2 4,164,305 - BPHYT_RS18510 0.21 -1.9 4,164,320 + BPHYT_RS18510 0.25 +0.2 4,164,445 - BPHYT_RS18510 0.60 +2.5 4,164,583 + +0.9 4,164,583 + -2.1 4,164,583 + -1.1 4,164,603 + +0.1 4,164,603 + -0.2 4,164,603 + +0.6 4,164,604 - +0.7 4,164,608 + BPHYT_RS18515 0.11 -0.7 4,164,609 - BPHYT_RS18515 0.11 -0.6 4,164,890 + -1.5 4,164,891 - -0.5 4,164,891 - +0.5 4,164,891 - -1.8 4,164,902 + +0.5 4,164,976 + +0.3 4,165,016 - -0.9 4,165,016 - -2.1 4,165,016 - +1.5 4,165,181 + -1.5 4,165,181 + +0.4 4,165,181 + -1.5 4,165,181 + -1.2 4,165,181 + +0.6 4,165,181 + +0.8 4,165,181 + +1.1 4,165,182 - +0.6 4,165,182 - +0.2 4,165,185 + -0.0 4,165,185 + -1.7 4,165,185 + -1.2 4,165,185 + -0.3 4,165,185 + +0.0 4,165,186 - +0.9 4,165,186 - +0.6 4,165,186 - -0.7 4,165,392 + -0.5 4,165,549 + -0.5 4,165,550 - +0.1 4,165,607 + -0.5 4,165,607 + +2.2 4,165,608 - -0.0 4,165,608 - -0.7 4,165,647 + -0.7 4,165,698 - +1.0 4,165,698 - +4.0 4,165,698 - -0.9 4,165,706 - -1.1 4,165,706 - -0.8 4,165,706 - -0.7 4,165,725 + +0.7 4,165,726 - +0.9
Or see this region's nucleotide sequence