Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18315

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,119,665	+		BPHYT_RS18310	0.70	-0.7
4,119,666	-				+1.5
4,119,909	-		BPHYT_RS18310	0.81	+1.2
4,120,163	+				+0.0
4,120,163	+				-0.7
4,120,200	+				-1.0
4,120,200	+				+0.0
4,120,307	+				+0.1
4,120,407	-				-0.2
4,120,407	-				-1.8
4,120,515	+				+1.5
4,120,516	-				+0.5
4,120,516	-				-1.5
4,120,516	-				+0.6
4,120,719	+				+0.3
4,120,720	-				+0.3
4,120,965	+		BPHYT_RS18315	0.25	+1.0
4,120,998	+		BPHYT_RS18315	0.28	-0.1
4,120,999	-		BPHYT_RS18315	0.28	-0.3
4,121,094	-		BPHYT_RS18315	0.36	+0.2
4,121,094	-		BPHYT_RS18315	0.36	-1.1
4,121,136	+		BPHYT_RS18315	0.39	+0.4
4,121,136	+		BPHYT_RS18315	0.39	-0.3
4,121,136	+		BPHYT_RS18315	0.39	+0.1
4,121,136	+		BPHYT_RS18315	0.39	+0.9
4,121,137	-		BPHYT_RS18315	0.39	-0.1
4,121,137	-		BPHYT_RS18315	0.39	+0.7
4,121,163	+		BPHYT_RS18315	0.41	+0.3
4,121,163	+		BPHYT_RS18315	0.41	+1.0
4,121,164	-		BPHYT_RS18315	0.41	+0.8
4,121,164	-		BPHYT_RS18315	0.41	-0.3
4,121,442	+		BPHYT_RS18315	0.64	+0.3
4,121,443	-		BPHYT_RS18315	0.64	+0.8
4,121,443	-		BPHYT_RS18315	0.64	+0.1
4,121,563	-		BPHYT_RS18315	0.74	+0.5
4,121,644	-		BPHYT_RS18315	0.80	+0.3
4,121,644	-		BPHYT_RS18315	0.80	-0.2
4,121,644	-		BPHYT_RS18315	0.80	+1.1
4,121,836	-				+0.2
4,121,901	+				-1.4
4,121,953	+				+0.7
4,121,954	-				+2.5
4,122,044	+				-0.1
4,122,045	-				+0.5
4,122,045	-				+2.4
4,122,185	+				+0.5
4,122,376	+		BPHYT_RS18320	0.18	+0.9
4,122,377	-		BPHYT_RS18320	0.18	-1.9
4,122,465	-		BPHYT_RS18320	0.31	-1.9
4,122,554	+		BPHYT_RS18320	0.44	-3.3
4,122,554	+		BPHYT_RS18320	0.44	-3.4
4,122,555	-		BPHYT_RS18320	0.44	-3.6
4,122,555	-		BPHYT_RS18320	0.44	-0.7
4,122,734	+		BPHYT_RS18320	0.70	+0.9
4,122,734	+		BPHYT_RS18320	0.70	-1.7
4,122,835	+		BPHYT_RS18320	0.85	+0.9
4,122,835	+		BPHYT_RS18320	0.85	-3.6
4,122,836	-		BPHYT_RS18320	0.85	-1.1
4,122,836	-		BPHYT_RS18320	0.85	-0.1
4,122,839	+		BPHYT_RS18320	0.86	-1.1