Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18270

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,107,196	+		BPHYT_RS18260	0.56	+0.9
4,107,196	+		BPHYT_RS18260	0.56	-1.7
4,107,196	+		BPHYT_RS18260	0.56	-0.7
4,107,196	+		BPHYT_RS18260	0.56	-2.3
4,107,197	-		BPHYT_RS18260	0.56	-1.4
4,107,283	+		BPHYT_RS18260	0.67	-3.0
4,107,283	+		BPHYT_RS18260	0.67	-1.3
4,107,547	+				-0.7
4,107,740	+		BPHYT_RS18265	0.33	+0.3
4,107,740	+		BPHYT_RS18265	0.33	-0.6
4,107,741	-		BPHYT_RS18265	0.33	-0.7
4,108,092	-				-0.1
4,108,103	+				-1.3
4,108,104	-				+0.9
4,108,110	-				-0.4
4,108,215	+				-0.1
4,108,256	+		BPHYT_RS18270	0.13	-2.3
4,108,284	+		BPHYT_RS18270	0.16	+0.9
4,108,470	+		BPHYT_RS18270	0.33	-1.6
4,108,470	+		BPHYT_RS18270	0.33	-3.5
4,108,470	+		BPHYT_RS18270	0.33	-0.5
4,108,470	+		BPHYT_RS18270	0.33	-3.4
4,108,470	+		BPHYT_RS18270	0.33	-1.7
4,108,471	-		BPHYT_RS18270	0.33	-3.4
4,108,471	-		BPHYT_RS18270	0.33	-0.7
4,108,471	-		BPHYT_RS18270	0.33	-0.1
4,108,712	+		BPHYT_RS18270	0.55	-3.0
4,108,712	+		BPHYT_RS18270	0.55	-1.9
4,108,910	+		BPHYT_RS18270	0.73	-0.1
4,108,910	+		BPHYT_RS18270	0.73	-4.0
4,108,971	+		BPHYT_RS18270	0.79	-2.6
4,109,025	+		BPHYT_RS18270	0.84	-2.3
4,109,025	+				+1.9
4,109,026	-		BPHYT_RS18270	0.84	+0.5
4,109,261	+				-0.4
4,109,261	+				+0.7
4,109,466	+		BPHYT_RS18275	0.15	+0.2
4,109,646	+		BPHYT_RS18275	0.37	-0.6
4,109,646	+		BPHYT_RS18275	0.37	-0.5
4,109,646	+		BPHYT_RS18275	0.37	+1.6
4,109,647	-		BPHYT_RS18275	0.37	-1.1
4,110,158	+				+0.6
4,110,158	+				-0.7
4,110,158	+				+0.7
4,110,159	-				-0.7
4,110,171	+				+1.9
4,110,172	-				-1.2