Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18240

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,102,166	-				+0.0
4,102,183	-				-0.4
4,102,183	-				-0.4
4,102,183	-				-0.4
4,102,240	-				-1.3
4,102,277	-				+0.8
4,102,502	+		BPHYT_RS18240	0.22	-0.7
4,102,915	+		BPHYT_RS18240	0.55	-0.6
4,102,915	+		BPHYT_RS18240	0.55	+0.2
4,102,915	+		BPHYT_RS18240	0.55	-0.5
4,102,915	+		BPHYT_RS18240	0.55	-0.8
4,102,915	+		BPHYT_RS18240	0.55	-1.3
4,102,915	+		BPHYT_RS18240	0.55	-0.1
4,102,916	-		BPHYT_RS18240	0.55	+1.9
4,102,916	-		BPHYT_RS18240	0.55	-0.7
4,102,916	-		BPHYT_RS18240	0.55	+0.2
4,102,916	-		BPHYT_RS18240	0.55	+0.2
4,102,916	-		BPHYT_RS18240	0.55	+0.6
4,102,916	-		BPHYT_RS18240	0.55	+0.0
4,102,916	-		BPHYT_RS18240	0.55	+0.1
4,102,985	-		BPHYT_RS18240	0.60	-1.3
4,103,056	+		BPHYT_RS18240	0.66	-0.6
4,103,056	+		BPHYT_RS18240	0.66	+0.2
4,103,057	-		BPHYT_RS18240	0.66	+0.7
4,103,213	+		BPHYT_RS18240	0.78	+1.2
4,103,244	-		BPHYT_RS18240	0.81	-0.7
4,103,244	-		BPHYT_RS18240	0.81	-0.8
4,103,281	+		BPHYT_RS18240	0.84	+0.2
4,103,717	+				+0.5
4,103,717	+				-0.9
4,103,717	+				-0.9
4,103,718	-				-0.9
4,103,718	-				+0.2
4,103,838	+		BPHYT_RS18245	0.16	-0.4
4,103,839	-				-2.4
4,103,852	+		BPHYT_RS18245	0.17	-0.3
4,103,852	+		BPHYT_RS18245	0.17	-1.6
4,103,852	+		BPHYT_RS18245	0.17	-0.5
4,103,852	+		BPHYT_RS18245	0.17	+0.4
4,103,853	-		BPHYT_RS18245	0.17	+2.2
4,103,853	-		BPHYT_RS18245	0.17	-1.4
4,103,880	+		BPHYT_RS18245	0.19	-0.8
4,103,976	+		BPHYT_RS18245	0.25	+0.9
4,103,976	+		BPHYT_RS18245	0.25	-1.0
4,103,977	-		BPHYT_RS18245	0.25	-0.6
4,103,977	-		BPHYT_RS18245	0.25	-1.7
4,103,978	+		BPHYT_RS18245	0.25	-0.1
4,103,978	+		BPHYT_RS18245	0.25	+0.2
4,103,978	+		BPHYT_RS18245	0.25	-1.7
4,103,978	+		BPHYT_RS18245	0.25	-0.6
4,103,978	+		BPHYT_RS18245	0.25	-2.6
4,103,978	+		BPHYT_RS18245	0.25	+0.4
4,103,978	+		BPHYT_RS18245	0.25	-1.4
4,103,978	+		BPHYT_RS18245	0.25	-0.6
4,103,978	+		BPHYT_RS18245	0.25	-0.1
4,103,978	+		BPHYT_RS18245	0.25	-0.4
4,103,978	+		BPHYT_RS18245	0.25	+0.6
4,103,978	+		BPHYT_RS18245	0.25	-1.2
4,103,978	+		BPHYT_RS18245	0.25	+0.5
4,103,978	+		BPHYT_RS18245	0.25	-1.2
4,103,978	+		BPHYT_RS18245	0.25	-0.5
4,103,979	-		BPHYT_RS18245	0.25	-0.7
4,103,979	-		BPHYT_RS18245	0.25	+0.2
4,103,979	-		BPHYT_RS18245	0.25	+1.9
4,103,979	-		BPHYT_RS18245	0.25	+1.2
4,103,979	-		BPHYT_RS18245	0.25	+0.3
4,103,979	-		BPHYT_RS18245	0.25	-0.5
4,103,982	+		BPHYT_RS18245	0.25	-1.7
4,103,983	-		BPHYT_RS18245	0.25	-1.9
4,104,072	+		BPHYT_RS18245	0.30	-1.3
4,104,116	+		BPHYT_RS18245	0.33	+0.9
4,104,117	-		BPHYT_RS18245	0.33	-0.3
4,104,201	-		BPHYT_RS18245	0.38	-0.1
4,104,237	+		BPHYT_RS18245	0.41	+0.3
4,104,237	+		BPHYT_RS18245	0.41	-0.6
4,104,238	-		BPHYT_RS18245	0.41	-0.3
4,104,238	-		BPHYT_RS18245	0.41	+0.8
4,104,238	-		BPHYT_RS18245	0.41	-1.7
4,104,238	-		BPHYT_RS18245	0.41	-1.7
4,104,238	-		BPHYT_RS18245	0.41	-0.1
4,104,238	-		BPHYT_RS18245	0.41	-0.8
4,104,238	-		BPHYT_RS18245	0.41	-1.1
4,104,238	-		BPHYT_RS18245	0.41	+0.8
4,104,238	-		BPHYT_RS18245	0.41	-0.7
4,104,239	+		BPHYT_RS18245	0.41	+0.7
4,104,239	+		BPHYT_RS18245	0.41	+0.9
4,104,240	-		BPHYT_RS18245	0.41	+0.0
4,104,240	-		BPHYT_RS18245	0.41	+0.0
4,104,240	-		BPHYT_RS18245	0.41	+0.8
4,104,351	+		BPHYT_RS18245	0.48	+0.6
4,104,352	-		BPHYT_RS18245	0.48	+0.2
4,104,353	+		BPHYT_RS18245	0.48	-0.4
4,104,353	+		BPHYT_RS18245	0.48	+0.1
4,104,353	+		BPHYT_RS18245	0.48	+0.8
4,104,354	-		BPHYT_RS18245	0.48	-1.9
4,104,396	+		BPHYT_RS18245	0.50	+0.6