Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18180 and BPHYT_RS18185 are separated by 1 nucleotides BPHYT_RS18185 and BPHYT_RS18190 are separated by 36 nucleotides BPHYT_RS18190 and BPHYT_RS18195 are separated by 64 nucleotides BPHYT_RS18195 and BPHYT_RS18200 are separated by 63 nucleotides BPHYT_RS18200 and BPHYT_RS18205 are separated by 16 nucleotides BPHYT_RS18205 and BPHYT_RS18210 are separated by 41 nucleotides BPHYT_RS18210 and BPHYT_RS18215 are separated by 156 nucleotides BPHYT_RS18215 and BPHYT_RS18220 are separated by 190 nucleotides
BPHYT_RS18180: BPHYT_RS18180 - transcription antitermination protein NusG, at 4,093,548 to 4,094,105
_RS18180
BPHYT_RS18185: BPHYT_RS18185 - preprotein translocase subunit SecE, at 4,094,107 to 4,094,487
_RS18185
BPHYT_RS18190: BPHYT_RS18190 - tRNA-Trp, at 4,094,524 to 4,094,599
_RS18190
BPHYT_RS18195: BPHYT_RS18195 - elongation factor Tu, at 4,094,664 to 4,095,854
_RS18195
BPHYT_RS18200: BPHYT_RS18200 - tRNA-Thr, at 4,095,918 to 4,095,992
_RS18200
BPHYT_RS18205: BPHYT_RS18205 - tRNA-Gly, at 4,096,009 to 4,096,082
_RS18205
BPHYT_RS18210: BPHYT_RS18210 - tRNA-Tyr, at 4,096,124 to 4,096,209
_RS18210
BPHYT_RS18215: BPHYT_RS18215 - 5S ribosomal RNA, at 4,096,366 to 4,096,479
_RS18215
BPHYT_RS18220: BPHYT_RS18220 - 23S ribosomal RNA, at 4,096,670 to 4,099,571
_RS18220
Position (kb) 4094
4095
4096 Strain fitness (log2 ratio) -2
-1
0
1 at 4096.289 kb on + strand at 4096.289 kb on + strand at 4096.292 kb on - strand at 4096.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 remove 4,096,289 + -1.9 4,096,289 + +0.1 4,096,292 - +0.1 4,096,292 - -0.5
Or see this region's nucleotide sequence