Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18125

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18115 and BPHYT_RS18120 are separated by 201 nucleotidesBPHYT_RS18120 and BPHYT_RS18125 are separated by 130 nucleotidesBPHYT_RS18125 and BPHYT_RS18130 are separated by 47 nucleotides BPHYT_RS18115: BPHYT_RS18115 - 50S ribosomal protein L3, at 4,074,175 to 4,074,834 _RS18115 BPHYT_RS18120: BPHYT_RS18120 - 30S ribosomal protein S10, at 4,075,036 to 4,075,347 _RS18120 BPHYT_RS18125: BPHYT_RS18125 - elongation factor Tu, at 4,075,478 to 4,076,668 _RS18125 BPHYT_RS18130: BPHYT_RS18130 - elongation factor G, at 4,076,716 to 4,078,818 _RS18130 Position (kb) 4075 4076 4077Strain fitness (log2 ratio) -1 0 1at 4075.462 kb on - strandat 4076.662 kb on + strandat 4076.662 kb on + strandat 4076.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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4,075,462 - -0.7
4,076,662 + +0.3
4,076,662 + -1.4
4,076,718 - -0.1

Or see this region's nucleotide sequence