Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17890

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,038,711	+		BPHYT_RS17885	0.13	-1.9
4,038,712	-		BPHYT_RS17885	0.13	-1.4
4,038,813	-		BPHYT_RS17885	0.22	-1.4
4,039,179	+		BPHYT_RS17885	0.56	-2.8
4,039,299	+		BPHYT_RS17885	0.67	+0.1
4,039,300	-		BPHYT_RS17885	0.67	-2.5
4,039,428	+		BPHYT_RS17885	0.79	-0.1
4,039,429	-		BPHYT_RS17885	0.79	-1.7
4,039,429	-		BPHYT_RS17885	0.79	-3.1
4,039,645	+				-0.1
4,039,645	+				-1.4
4,039,651	+				-2.3
4,039,652	-				+0.0
4,039,652	-				+0.9
4,039,652	-				-0.1
4,039,662	-				-0.1
4,039,778	-		BPHYT_RS17890	0.21	-1.7
4,039,797	-		BPHYT_RS17890	0.25	-1.1
4,039,899	-		BPHYT_RS17890	0.43	-0.7
4,040,173	+				-0.1
4,040,183	-				-1.4
4,040,253	+				-1.1
4,040,337	-				+0.3
4,040,383	+				-0.3
4,040,503	+				-3.4
4,040,578	-				-0.1
4,040,783	+		BPHYT_RS17895	0.21	-0.4
4,040,984	+		BPHYT_RS17895	0.32	+0.6
4,040,984	+		BPHYT_RS17895	0.32	+0.0
4,041,133	+		BPHYT_RS17895	0.41	+0.1
4,041,133	+		BPHYT_RS17895	0.41	-2.1
4,041,134	-		BPHYT_RS17895	0.41	-2.1
4,041,134	-		BPHYT_RS17895	0.41	-0.5