Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17715

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
4,001,900	-		BPHYT_RS17710	0.88	+0.0
4,002,062	+				-1.0
4,002,062	+				+1.0
4,002,063	-				+1.1
4,002,063	-				+0.7
4,002,093	-				-0.8
4,002,093	-				+0.3
4,002,093	-				+0.6
4,002,278	+		BPHYT_RS17715	0.23	+1.0
4,002,279	-		BPHYT_RS17715	0.23	-2.9
4,002,279	-		BPHYT_RS17715	0.23	+0.0
4,002,279	-		BPHYT_RS17715	0.23	-5.4
4,002,279	-		BPHYT_RS17715	0.23	-5.4
4,002,350	-		BPHYT_RS17715	0.33	-4.7
4,002,350	-		BPHYT_RS17715	0.33	-5.2
4,002,350	-		BPHYT_RS17715	0.33	-3.6
4,002,413	-		BPHYT_RS17715	0.42	-3.1
4,002,413	-		BPHYT_RS17715	0.42	-3.9
4,002,413	-		BPHYT_RS17715	0.42	-3.4
4,002,507	-		BPHYT_RS17715	0.55	-2.3
4,002,526	+		BPHYT_RS17715	0.58	-1.3
4,002,602	-		BPHYT_RS17715	0.69	-4.2
4,002,744	-		BPHYT_RS17715	0.89	-2.0