Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17700

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,998,112	-				+1.1
3,998,199	-		BPHYT_RS17695	0.16	-0.5
3,998,199	-		BPHYT_RS17695	0.16	+0.0
3,998,302	+		BPHYT_RS17695	0.33	-0.6
3,998,303	-		BPHYT_RS17695	0.33	+0.3
3,998,303	-		BPHYT_RS17695	0.33	+1.6
3,998,303	-		BPHYT_RS17695	0.33	+1.2
3,998,303	-		BPHYT_RS17695	0.33	+1.0
3,998,327	-		BPHYT_RS17695	0.37	+2.3
3,998,612	+		BPHYT_RS17695	0.82	-2.0
3,998,612	+		BPHYT_RS17695	0.82	-2.3
3,998,613	-		BPHYT_RS17695	0.83	+1.0
3,998,613	-		BPHYT_RS17695	0.83	+0.5
3,998,613	-		BPHYT_RS17695	0.83	+0.5
3,998,699	+				+0.6
3,998,700	-				+0.3
3,998,765	+				-2.0
3,998,779	+				-1.9
3,998,802	-				+0.9
3,998,802	-				+0.5
3,999,104	+		BPHYT_RS17700	0.52	-1.6
3,999,105	-		BPHYT_RS17700	0.52	-5.3
3,999,132	+		BPHYT_RS17700	0.56	-1.0
3,999,133	-		BPHYT_RS17700	0.57	-0.6
3,999,133	-		BPHYT_RS17700	0.57	-0.3
3,999,175	-		BPHYT_RS17700	0.64	-0.6
3,999,175	-		BPHYT_RS17700	0.64	-0.6
3,999,408	+				-3.8
3,999,409	-				-2.8
3,999,409	-				+0.9
3,999,409	-				-0.5
3,999,422	+				-0.6
3,999,422	+				-4.7
3,999,423	-				+0.8
3,999,423	-				-1.0
3,999,453	+				-1.3
3,999,453	+				-2.5
3,999,454	-				+0.2
3,999,454	-				+1.4
3,999,600	-				-0.1
3,999,600	-				-0.3
3,999,633	+		BPHYT_RS17705	0.12	-3.4
3,999,634	-		BPHYT_RS17705	0.12	-0.6
3,999,780	+		BPHYT_RS17705	0.26	+1.5
3,999,781	-		BPHYT_RS17705	0.26	+0.8
3,999,833	+		BPHYT_RS17705	0.31	-1.6
3,999,833	+		BPHYT_RS17705	0.31	+0.1
3,999,834	-		BPHYT_RS17705	0.31	-0.1
3,999,834	-		BPHYT_RS17705	0.31	-0.2
3,999,834	-		BPHYT_RS17705	0.31	+0.4
3,999,838	+		BPHYT_RS17705	0.31	+0.8
3,999,838	+		BPHYT_RS17705	0.31	+1.2
4,000,000	+		BPHYT_RS17705	0.47	-0.8
4,000,001	-		BPHYT_RS17705	0.47	+1.0
4,000,001	-		BPHYT_RS17705	0.47	+0.9
4,000,028	+		BPHYT_RS17705	0.49	+0.3
4,000,028	+		BPHYT_RS17705	0.49	+1.0
4,000,069	+		BPHYT_RS17705	0.53	-2.2
4,000,105	+		BPHYT_RS17705	0.56	+1.3
4,000,105	+		BPHYT_RS17705	0.56	-0.9
4,000,105	+		BPHYT_RS17705	0.56	-1.2
4,000,106	-		BPHYT_RS17705	0.56	+0.1
4,000,106	-		BPHYT_RS17705	0.56	+0.0
4,000,106	-		BPHYT_RS17705	0.56	-0.6
4,000,106	-		BPHYT_RS17705	0.56	-2.3
4,000,106	-		BPHYT_RS17705	0.56	+0.0
4,000,106	-				+4.3
4,000,106	-		BPHYT_RS17705	0.56	-0.6
4,000,226	-		BPHYT_RS17705	0.68	-1.0
4,000,226	-		BPHYT_RS17705	0.68	+1.0