Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17395

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,940,995	-		BPHYT_RS17390	0.34	+1.0
3,941,033	+		BPHYT_RS17390	0.37	-1.2
3,941,034	-		BPHYT_RS17390	0.37	-0.0
3,941,154	-		BPHYT_RS17390	0.45	-1.6
3,941,154	-		BPHYT_RS17390	0.45	+1.0
3,941,183	+		BPHYT_RS17390	0.47	-0.4
3,941,183	+		BPHYT_RS17390	0.47	-0.5
3,941,183	+		BPHYT_RS17390	0.47	-1.8
3,941,183	+		BPHYT_RS17390	0.47	+0.2
3,941,297	+		BPHYT_RS17390	0.54	-0.3
3,941,297	+		BPHYT_RS17390	0.54	-0.6
3,941,298	-		BPHYT_RS17390	0.54	-1.8
3,941,299	+		BPHYT_RS17390	0.55	-1.4
3,941,300	-		BPHYT_RS17390	0.55	-1.0
3,941,300	-		BPHYT_RS17390	0.55	-1.5
3,941,300	-		BPHYT_RS17390	0.55	+1.6
3,941,303	+		BPHYT_RS17390	0.55	+0.4
3,941,303	+		BPHYT_RS17390	0.55	-1.1
3,941,303	+		BPHYT_RS17390	0.55	-2.7
3,941,303	+		BPHYT_RS17390	0.55	-1.0
3,941,303	+		BPHYT_RS17390	0.55	+0.6
3,941,304	-		BPHYT_RS17390	0.55	+1.0
3,941,304	-		BPHYT_RS17390	0.55	-0.4
3,941,304	-		BPHYT_RS17390	0.55	-0.0
3,941,304	-		BPHYT_RS17390	0.55	-2.0
3,941,304	-		BPHYT_RS17390	0.55	-1.1
3,941,306	+		BPHYT_RS17390	0.55	-1.6
3,941,306	+		BPHYT_RS17390	0.55	-1.1
3,941,310	-		BPHYT_RS17390	0.55	-1.0
3,941,432	-		BPHYT_RS17390	0.63	-1.6
3,941,846	+				+0.8
3,941,847	-				-1.3
3,941,847	-				-1.2
3,942,013	-				-2.4
3,942,027	+				-2.0
3,942,027	+				-1.9
3,942,027	+				-0.4
3,942,028	-				-4.8
3,942,043	-				-3.8
3,942,075	+		BPHYT_RS17395	0.14	-2.7
3,942,619	+				-2.4
3,943,269	+		BPHYT_RS17400	0.64	-3.3
3,943,277	+		BPHYT_RS17400	0.65	-4.2
3,943,277	+		BPHYT_RS17400	0.65	-2.6
3,943,277	+		BPHYT_RS17400	0.65	-1.8
3,943,278	-		BPHYT_RS17400	0.65	-0.9
3,943,278	-		BPHYT_RS17400	0.65	-2.3
3,943,358	+		BPHYT_RS17400	0.72	+1.0
3,943,359	-		BPHYT_RS17400	0.72	-3.0
3,943,517	+		BPHYT_RS17400	0.88	-1.5
3,943,518	-		BPHYT_RS17400	0.88	-3.4
3,943,518	-		BPHYT_RS17400	0.88	-3.1