Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17290

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,916,127	+				-0.0
3,916,127	+				+0.6
3,916,128	-				+0.3
3,916,128	-				+1.1
3,916,128	-				-0.8
3,916,954	+				-0.8
3,916,955	-				+0.5
3,916,955	-				+0.6
3,916,955	-				+0.5
3,916,971	+				+1.6
3,916,971	+				-0.1
3,916,972	-				+0.0
3,916,972	-				+1.0
3,916,972	-				-0.1
3,917,015	+				-1.1
3,917,016	-				-1.5
3,917,020	-				+1.1
3,917,020	-				+1.4
3,917,023	+				+0.8
3,917,023	+				+3.6
3,917,024	-				-1.5
3,917,035	+				+0.1
3,917,036	-				-0.1
3,917,048	+				-1.4
3,917,048	+				-0.5
3,917,151	+				-1.5
3,917,152	-				+0.6
3,917,152	-				-0.6
3,917,152	-				+0.0
3,917,204	-		BPHYT_RS17290	0.12	-0.8
3,917,204	-		BPHYT_RS17290	0.12	+0.2
3,917,362	+		BPHYT_RS17290	0.25	-1.9
3,917,362	+		BPHYT_RS17290	0.25	-2.0
3,917,362	+		BPHYT_RS17290	0.25	-1.8
3,917,363	-		BPHYT_RS17290	0.25	-0.3
3,917,468	-		BPHYT_RS17290	0.34	-1.0
3,917,536	+		BPHYT_RS17290	0.40	-1.5
3,917,536	+		BPHYT_RS17290	0.40	-0.3
3,917,536	+		BPHYT_RS17290	0.40	-1.4
3,917,537	-		BPHYT_RS17290	0.40	-2.2
3,917,551	+		BPHYT_RS17290	0.41	-2.7
3,917,578	+		BPHYT_RS17290	0.44	+0.2
3,917,579	-		BPHYT_RS17290	0.44	-0.6
3,917,641	+		BPHYT_RS17290	0.49	-0.7
3,917,767	+		BPHYT_RS17290	0.60	-2.8
3,917,767	+		BPHYT_RS17290	0.60	-0.9
3,917,795	-		BPHYT_RS17290	0.62	-0.6
3,917,822	-		BPHYT_RS17290	0.64	-0.5
3,917,822	-		BPHYT_RS17290	0.64	-0.5
3,917,854	+		BPHYT_RS17290	0.67	-0.9
3,917,890	+		BPHYT_RS17290	0.70	-1.7
3,917,890	+		BPHYT_RS17290	0.70	-3.4
3,917,890	+		BPHYT_RS17290	0.70	-1.6
3,917,890	+		BPHYT_RS17290	0.70	-0.5
3,917,890	+				-0.3
3,917,891	-		BPHYT_RS17290	0.70	+0.7
3,917,950	+		BPHYT_RS17290	0.75	+0.0
3,917,986	+		BPHYT_RS17290	0.78	-0.7
3,917,987	-		BPHYT_RS17290	0.79	-0.8
3,917,992	+		BPHYT_RS17290	0.79	-2.3
3,917,993	-		BPHYT_RS17290	0.79	-2.2
3,918,078	+		BPHYT_RS17290	0.86	-1.8
3,918,078	+		BPHYT_RS17290	0.86	+1.0
3,918,088	+		BPHYT_RS17290	0.87	-2.2
3,918,089	-		BPHYT_RS17290	0.87	-2.8
3,918,089	-		BPHYT_RS17290	0.87	-1.4
3,918,104	-		BPHYT_RS17290	0.89	+0.7
3,918,235	+				-1.6
3,918,238	+				-0.2
3,918,238	+				+0.4
3,918,238	+				-1.1
3,918,331	-				+0.2
3,918,432	-				+0.4
3,918,513	+				+0.8
3,918,524	+				-1.1
3,918,525	-				+0.8
3,918,548	+				-1.2
3,918,664	+		BPHYT_RS17295	0.14	-1.6
3,918,971	+		BPHYT_RS17295	0.32	-0.1
3,918,971	+		BPHYT_RS17295	0.32	-3.0
3,919,061	+		BPHYT_RS17295	0.38	+2.4
3,919,095	+		BPHYT_RS17295	0.40	+0.5
3,919,095	+		BPHYT_RS17295	0.40	-2.7
3,919,138	-		BPHYT_RS17295	0.42	+0.7
3,919,169	+		BPHYT_RS17295	0.44	+0.7
3,919,169	+		BPHYT_RS17295	0.44	-0.2
3,919,169	+		BPHYT_RS17295	0.44	-2.6
3,919,170	-		BPHYT_RS17295	0.44	-0.2