Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17095

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,873,757	+		BPHYT_RS17085	0.80	+0.4
3,873,758	-		BPHYT_RS17085	0.81	+1.2
3,873,784	+		BPHYT_RS17085	0.85	+0.9
3,873,784	+		BPHYT_RS17085	0.85	-0.7
3,873,785	-		BPHYT_RS17085	0.86	-0.6
3,873,862	+				-0.8
3,874,027	+				-0.7
3,874,644	+				+0.7
3,874,644	+				+1.1
3,874,645	-				+2.6
3,874,645	-				+0.4
3,875,133	+		BPHYT_RS17095	0.27	+0.6
3,875,859	+		BPHYT_RS17095	0.69	-0.6
3,875,860	-		BPHYT_RS17095	0.69	-1.6
3,875,880	+		BPHYT_RS17095	0.70	-1.0
3,875,881	-		BPHYT_RS17095	0.70	-2.0
3,876,028	-		BPHYT_RS17095	0.79	-0.6
3,876,281	-				-0.6
3,876,281	-				-1.8
3,876,282	+				-1.8
3,876,282	+				+1.0
3,876,282	+				+1.0
3,876,283	-				-1.3
3,876,283	-				-0.6
3,876,408	-				-1.9
3,876,506	+				-0.2
3,876,507	-				+1.0
3,876,507	-				+1.0
3,876,507	-				-1.8
3,876,668	+				-1.2
3,876,676	+				-1.2
3,876,679	-				-1.8
3,876,693	+				+1.0
3,876,714	+				+1.0
3,876,875	+		BPHYT_RS17100	0.22	+0.0
3,876,875	+		BPHYT_RS17100	0.22	-1.0
3,876,978	-		BPHYT_RS17100	0.35	+1.0
3,877,142	+		BPHYT_RS17100	0.58	+0.0
3,877,142	+		BPHYT_RS17100	0.58	-0.6
3,877,142	+		BPHYT_RS17100	0.58	+1.0
3,877,142	+		BPHYT_RS17100	0.58	-0.6
3,877,142	+		BPHYT_RS17100	0.58	+0.0
3,877,142	+		BPHYT_RS17100	0.58	-2.8
3,877,142	+		BPHYT_RS17100	0.58	+0.0
3,877,143	-		BPHYT_RS17100	0.58	+0.0
3,877,143	-		BPHYT_RS17100	0.58	+1.0
3,877,143	-		BPHYT_RS17100	0.58	-0.6
3,877,144	+		BPHYT_RS17100	0.58	+1.0
3,877,144	+		BPHYT_RS17100	0.58	-0.6
3,877,144	+		BPHYT_RS17100	0.58	+0.0
3,877,145	-		BPHYT_RS17100	0.58	+1.0
3,877,167	-		BPHYT_RS17100	0.61	-0.6
3,877,329	-		BPHYT_RS17100	0.83	+0.0