Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16580

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,757,126	+		BPHYT_RS16575	0.39	+0.4
3,757,230	-		BPHYT_RS16575	0.46	+1.0
3,757,254	-		BPHYT_RS16575	0.48	-2.4
3,757,289	+		BPHYT_RS16575	0.51	+3.2
3,757,289	+		BPHYT_RS16575	0.51	+0.5
3,757,290	-		BPHYT_RS16575	0.51	+0.0
3,757,290	-		BPHYT_RS16575	0.51	+1.0
3,757,472	+		BPHYT_RS16575	0.64	-1.1
3,757,473	-		BPHYT_RS16575	0.64	+1.0
3,757,658	+		BPHYT_RS16575	0.77	+0.5
3,757,658	+		BPHYT_RS16575	0.77	+2.0
3,757,658	+		BPHYT_RS16575	0.77	-1.4
3,757,658	+		BPHYT_RS16575	0.77	+4.2
3,757,658	+		BPHYT_RS16575	0.77	+0.3
3,757,659	-		BPHYT_RS16575	0.77	+0.0
3,757,659	-		BPHYT_RS16575	0.77	+0.4
3,757,659	-		BPHYT_RS16575	0.77	-1.2
3,757,659	-		BPHYT_RS16575	0.77	+0.0
3,757,659	-		BPHYT_RS16575	0.77	-1.3
3,757,660	+		BPHYT_RS16575	0.77	-3.8
3,757,712	+		BPHYT_RS16575	0.81	+0.7
3,757,712	+		BPHYT_RS16575	0.81	-0.3
3,757,805	+		BPHYT_RS16575	0.87	+0.5
3,757,805	+		BPHYT_RS16575	0.87	+0.9
3,757,805	+		BPHYT_RS16575	0.87	+0.4
3,757,805	+		BPHYT_RS16575	0.87	+2.1
3,757,806	-		BPHYT_RS16575	0.87	-1.3
3,757,806	-		BPHYT_RS16575	0.87	-1.1
3,757,839	-		BPHYT_RS16575	0.90	-1.7
3,757,875	+				+1.1
3,757,876	-				-1.8
3,757,914	+				-1.0
3,757,992	+				-0.9
3,757,992	+				+0.6
3,759,461	+				+0.4
3,759,543	+				-0.3
3,759,544	-				+0.8
3,759,626	+				+0.4
3,759,627	-				+0.0
3,759,656	+				+1.5
3,759,656	+				+0.6
3,759,657	-				+0.2
3,759,657	-				-0.4
3,759,659	+				+0.8
3,759,660	-				-1.5
3,759,660	-				+0.8
3,759,735	+		BPHYT_RS16585	0.10	+0.9
3,759,882	+		BPHYT_RS16585	0.24	-0.1
3,759,882	+		BPHYT_RS16585	0.24	+0.5
3,759,882	+		BPHYT_RS16585	0.24	+1.3
3,759,943	+		BPHYT_RS16585	0.30	+1.0
3,759,944	-		BPHYT_RS16585	0.30	-0.8
3,760,173	+		BPHYT_RS16585	0.51	+0.3
3,760,173	+		BPHYT_RS16585	0.51	-0.4
3,760,174	-		BPHYT_RS16585	0.51	-1.2
3,760,192	-		BPHYT_RS16585	0.53	+0.4
3,760,254	-		BPHYT_RS16585	0.59	+0.2
3,760,254	-		BPHYT_RS16585	0.59	+0.0