Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16525

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,745,235	-		BPHYT_RS16520	0.16	+0.8
3,745,281	-		BPHYT_RS16520	0.20	-2.4
3,745,553	+		BPHYT_RS16520	0.43	-0.1
3,745,554	-		BPHYT_RS16520	0.43	-0.3
3,745,554	-		BPHYT_RS16520	0.43	+0.3
3,745,554	-		BPHYT_RS16520	0.43	+0.0
3,745,557	+		BPHYT_RS16520	0.43	-0.3
3,745,557	+		BPHYT_RS16520	0.43	+1.0
3,745,557	+		BPHYT_RS16520	0.43	-0.1
3,745,557	+		BPHYT_RS16520	0.43	-1.1
3,745,558	-		BPHYT_RS16520	0.43	+0.6
3,745,558	-		BPHYT_RS16520	0.43	+0.1
3,745,558	-		BPHYT_RS16520	0.43	+1.0
3,745,558	-		BPHYT_RS16520	0.43	+0.5
3,745,947	+		BPHYT_RS16520	0.77	+1.0
3,745,973	-		BPHYT_RS16520	0.79	+0.5
3,745,973	-		BPHYT_RS16520	0.79	+1.0
3,745,973	-		BPHYT_RS16520	0.79	-1.5
3,746,237	-				-1.3
3,747,255	+		BPHYT_RS16530	0.52	+0.7
3,747,255	+		BPHYT_RS16530	0.52	+1.1
3,747,266	+		BPHYT_RS16530	0.53	-1.8
3,747,381	+		BPHYT_RS16530	0.65	-0.1
3,747,382	-		BPHYT_RS16530	0.65	+0.3
3,747,382	-		BPHYT_RS16530	0.65	-0.1