Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16470

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,734,105	-		BPHYT_RS16465	0.61	+0.5
3,734,105	-		BPHYT_RS16465	0.61	+0.1
3,734,261	+		BPHYT_RS16465	0.70	-1.2
3,734,261	+		BPHYT_RS16465	0.70	+0.1
3,734,261	+		BPHYT_RS16465	0.70	-0.5
3,734,262	-		BPHYT_RS16465	0.70	-0.1
3,734,262	-		BPHYT_RS16465	0.70	-0.6
3,734,264	-		BPHYT_RS16465	0.70	+0.2
3,734,264	-		BPHYT_RS16465	0.70	+0.6
3,734,446	+		BPHYT_RS16465	0.82	-0.8
3,734,461	+		BPHYT_RS16465	0.82	+0.5
3,734,461	+		BPHYT_RS16465	0.82	+0.9
3,734,930	+				+0.8
3,734,953	+				+0.3
3,734,953	+				+0.3
3,734,958	+				+1.7
3,734,958	+				-1.5
3,734,958	+				+0.5
3,734,958	+				+0.1
3,734,958	+				-0.6
3,734,958	+				-1.8
3,734,958	+				+0.3
3,734,959	-				-1.9
3,734,959	-				+1.5
3,734,959	-				-0.4
3,734,959	-				-1.3
3,734,959	-				+0.5
3,735,001	+				-0.6
3,735,002	-				-1.4
3,735,002	-				-0.8
3,735,002	-				-3.8
3,735,006	+				-0.4
3,735,007	-				+4.0
3,735,007	-				+2.9
3,735,317	+		BPHYT_RS16470	0.28	+3.1
3,735,317	+		BPHYT_RS16470	0.28	+2.4
3,735,317	+		BPHYT_RS16470	0.28	+3.6
3,735,318	-		BPHYT_RS16470	0.28	+3.6
3,735,320	-		BPHYT_RS16470	0.28	+2.6
3,735,568	+		BPHYT_RS16470	0.60	+0.2
3,735,568	+		BPHYT_RS16470	0.60	+3.3
3,735,569	-		BPHYT_RS16470	0.60	+5.2
3,735,866	+				+5.1
3,735,866	+				+4.4
3,735,866	+				+3.9
3,735,867	-				+3.2
3,736,028	+				-1.0
3,736,028	+				+0.0
3,736,029	-				+0.3
3,736,029	-				+0.0
3,736,029	-				-1.0
3,736,092	+				-0.1
3,736,093	-				-1.1
3,736,105	-				+0.4
3,736,105	-				-1.5
3,736,203	-				+2.6
3,736,261	-		BPHYT_RS16475	0.32	-2.0
3,736,261	-		BPHYT_RS16475	0.32	+0.2
3,736,493	+				+0.3
3,736,552	+				+0.0
3,736,566	-				-0.3
3,736,572	+				+3.0
3,736,573	-				-0.4
3,736,573	-				+1.6
3,736,753	-		BPHYT_RS16480	0.23	-0.5
3,736,758	+		BPHYT_RS16480	0.24	+0.7
3,736,759	-		BPHYT_RS16480	0.24	-0.2