Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16355

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,710,192	+				+0.1
3,710,193	-				-0.5
3,710,339	+		BPHYT_RS16350	0.18	-0.5
3,710,340	-		BPHYT_RS16350	0.18	-1.2
3,710,340	-		BPHYT_RS16350	0.18	-0.7
3,710,356	+		BPHYT_RS16350	0.20	+0.8
3,710,357	-		BPHYT_RS16350	0.21	+0.1
3,710,435	+		BPHYT_RS16350	0.31	-0.5
3,710,436	-		BPHYT_RS16350	0.31	+0.7
3,710,666	-				+2.6
3,710,881	+				+0.1
3,710,882	-				-1.4
3,710,882	-				+0.3
3,710,882	-				-0.7
3,710,882	-				-0.9
3,710,989	+				+0.9
3,710,989	+				+0.7
3,710,989	+				+1.6
3,710,990	-				+0.4
3,710,990	-				+2.3
3,710,996	+				+2.6
3,711,054	+				+1.4
3,711,054	+				+0.4
3,711,054	+				+1.3
3,711,054	+				+0.1
3,711,054	+				+0.6
3,711,055	-				+5.8
3,711,055	-				-0.3
3,711,055	-				+0.3
3,711,097	-				+0.7
3,711,320	+		BPHYT_RS16355	0.32	-1.8
3,711,321	-		BPHYT_RS16355	0.32	-1.1
3,711,495	+		BPHYT_RS16355	0.56	-2.0
3,711,510	-		BPHYT_RS16355	0.59	-1.5
3,711,534	-		BPHYT_RS16355	0.62	-0.9
3,711,616	-		BPHYT_RS16355	0.74	-1.4
3,711,797	+				-0.9
3,711,986	-		BPHYT_RS16360	0.16	-0.5