Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16245

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,688,182	-		BPHYT_RS16245	0.10	-1.3
3,688,389	-		BPHYT_RS16245	0.28	-1.3
3,688,389	-		BPHYT_RS16245	0.28	-0.5
3,688,611	-		BPHYT_RS16245	0.46	-1.7
3,688,770	-		BPHYT_RS16245	0.60	-1.9
3,688,915	-		BPHYT_RS16245	0.72	-1.5
3,688,963	-		BPHYT_RS16245	0.76	-3.6
3,689,257	-				+1.6
3,689,257	-				+1.6
3,689,257	-				+0.7
3,689,301	+				+3.4
3,689,301	+				+0.1
3,689,302	-				+0.3
3,689,302	-				-0.7
3,689,374	-				+0.2
3,689,587	-		BPHYT_RS16250	0.41	-0.9
3,689,894	-				-0.6
3,689,894	-				+0.2
3,690,016	-				+0.2
3,690,166	-				+0.1