Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16020

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,633,848	-		BPHYT_RS16010	0.88	+0.6
3,633,934	+				+2.3
3,633,934	+				+0.0
3,633,934	+				-0.4
3,634,249	+		BPHYT_RS16015	0.16	+1.6
3,634,252	+		BPHYT_RS16015	0.16	+1.0
3,634,253	-		BPHYT_RS16015	0.16	-0.4
3,634,336	-		BPHYT_RS16015	0.33	-0.7
3,634,391	+		BPHYT_RS16015	0.44	-0.2
3,634,392	-		BPHYT_RS16015	0.44	+0.6
3,634,541	-		BPHYT_RS16015	0.73	-0.0
3,634,888	-		BPHYT_RS16020	0.37	+3.0
3,635,035	+		BPHYT_RS16020	0.66	+0.0
3,635,049	+		BPHYT_RS16020	0.68	+1.4
3,635,343	-				-1.1
3,635,517	+		BPHYT_RS16025	0.27	+1.6
3,635,517	+		BPHYT_RS16025	0.27	-1.6
3,635,518	-		BPHYT_RS16025	0.27	+1.1
3,635,663	-		BPHYT_RS16025	0.50	-0.6
3,635,673	+		BPHYT_RS16025	0.52	+1.2
3,636,112	-				-0.8