Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15875

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15870 and BPHYT_RS15875 overlap by 20 nucleotidesBPHYT_RS15875 and BPHYT_RS15880 are separated by 149 nucleotides BPHYT_RS15870: BPHYT_RS15870 - tetraacyldisaccharide 4'-kinase, at 3,604,483 to 3,605,499 _RS15870 BPHYT_RS15875: BPHYT_RS15875 - hypothetical protein, at 3,605,480 to 3,605,683 _RS15875 BPHYT_RS15880: BPHYT_RS15880 - 3-deoxy-manno-octulosonate cytidylyltransferase 1, at 3,605,833 to 3,606,633 _RS15880 Position (kb) 3605 3606Strain fitness (log2 ratio) -2 -1 0 1at 3605.462 kb on + strandat 3605.462 kb on + strandat 3605.462 kb on + strandat 3606.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
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3,605,462 + -2.1
3,605,462 + -0.5
3,605,462 + -0.7
3,606,620 + +0.2

Or see this region's nucleotide sequence