Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15575

Experiment: Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1
3,532,821	-		BPHYT_RS15570	0.20	+1.1
3,532,861	+		BPHYT_RS15570	0.24	+0.4
3,532,862	-		BPHYT_RS15570	0.24	+0.2
3,532,862	-		BPHYT_RS15570	0.24	-0.9
3,533,009	+		BPHYT_RS15570	0.38	-0.5
3,533,009	+		BPHYT_RS15570	0.38	+0.5
3,533,010	-		BPHYT_RS15570	0.38	+2.9
3,533,010	-		BPHYT_RS15570	0.38	+1.1
3,533,175	+		BPHYT_RS15570	0.55	-0.7
3,533,185	+		BPHYT_RS15570	0.56	-0.4
3,533,241	+		BPHYT_RS15570	0.61	-0.8
3,533,242	-		BPHYT_RS15570	0.61	-1.9
3,533,242	-		BPHYT_RS15570	0.61	-1.4
3,533,242	-		BPHYT_RS15570	0.61	+0.1
3,533,596	+				+2.1
3,533,602	+				+0.1
3,533,603	-				-0.9
3,533,603	-				-1.0
3,533,654	+				+2.0
3,533,655	-				+0.4
3,533,758	+				-2.1
3,533,758	+				-1.7
3,533,759	-				+1.1
3,533,759	-				-1.3
3,533,759	-				-2.1
3,533,796	+				-1.3
3,534,143	+		BPHYT_RS15575	0.38	+0.1
3,534,197	+		BPHYT_RS15575	0.43	-0.9
3,534,289	+		BPHYT_RS15575	0.52	-1.5
3,534,491	+		BPHYT_RS15575	0.72	+0.4
3,534,491	+		BPHYT_RS15575	0.72	-0.5
3,534,492	-		BPHYT_RS15575	0.72	-0.7
3,534,644	+		BPHYT_RS15575	0.87	-0.5
3,534,653	+		BPHYT_RS15575	0.88	-3.5
3,534,653	+		BPHYT_RS15575	0.88	-1.3
3,534,653	+		BPHYT_RS15575	0.88	-1.1
3,534,654	-		BPHYT_RS15575	0.88	-0.9
3,534,734	+				-1.4
3,534,735	-				+0.3
3,534,735	-				-0.9
3,534,824	-				-0.3
3,534,828	-				-0.2
3,535,178	+				-0.1
3,535,367	+		BPHYT_RS15580	0.19	+0.1
3,535,368	-		BPHYT_RS15580	0.19	-0.9
3,535,411	+		BPHYT_RS15580	0.23	+0.3
3,535,411	+		BPHYT_RS15580	0.23	+0.5
3,535,411	+		BPHYT_RS15580	0.23	+0.8
3,535,412	-		BPHYT_RS15580	0.23	-0.9
3,535,601	+		BPHYT_RS15580	0.39	+0.5
3,535,601	+		BPHYT_RS15580	0.39	-0.6
3,535,602	-		BPHYT_RS15580	0.39	+1.1